PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01103680G0010
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 137aa    MW: 15303.4 Da    PI: 9.4985
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01103680G0010genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.75.5e-05110134529
                      HHHHHHHHHHHHHHHHHHHHCTSCC CS
              HLH   5 hnerErrRRdriNsafeeLrellPk 29 
                      h +rEr+RR+++ ++++ L  ++ +
  PH01103680G0010 110 HMMRERQRREKLSQSYADLYAMVSP 134
                      889****************888865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.07E-5101134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MDSYYVFQDE AAFFAHGVPA SPELPFGLIA SPELPFGLIA SPEPPLAAAR QSAFQEYNCA  60
GPELLSGMAE GTGRKRNIHR RVMDVLGRMR GAEKEVPQRG AVESSRGFRH MMRERQRREK  120
LSQSYADLYA MVSPRSK
Functional Description ? help Back to Top
Source Description
UniProtMay act on an initial response of jasmonate-regulated gene expression toward drought tolerance as part of a BHLH148-TIFY11D/JAZ12-COI1A complex. {ECO:0000269|PubMed:21332845}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01103680G0010
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), methyl jasmonate (MeJA), drought, cold, salt and wounding. {ECO:0000269|PubMed:21332845}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1018381e-113FP101838.1 Phyllostachys edulis cDNA clone: bphyem112h05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020179775.11e-37transcription factor BHLH148 isoform X2
RefseqXP_020179777.11e-37transcription factor BHLH148 isoform X3
SwissprotQ75KV92e-33BH148_ORYSJ; Transcription factor BHLH148
TrEMBLA0A3Q8BRF52e-38A0A3Q8BRF5_LEYCH; BHLH92a
TrEMBLA0A446TEN59e-39A0A446TEN5_TRITD; Uncharacterized protein
STRINGONIVA10G02990.32e-38(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59403450
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]