PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01107020G0010
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family Trihelix
Protein Properties Length: 207aa    MW: 21062.5 Da    PI: 10.6237
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01107020G0010genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix53.27.9e-171091512466
         trihelix  24 gklkkplWeevskkmrergferspkqCkekwenlnkrykkike 66 
                      +  k+p Wee+s+ m++ g++rs+k+Ckekwen+nk++kk   
  PH01107020G0010 109 AGPKGPFWEEISAGMQRLGYNRSAKRCKEKWENINKYFKKNGG 151
                      4578999********************************9755 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122031.16E-18108148No hitNo description
PfamPF138373.6E-11111154No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MAASRDTAVV SFIQKITGQT IPMPSIAAPA ITVMPPSSQP HPTPIASAAP APPPSSQPPA  60
SHSQTPPQPQ PSPQPQQKSQ MPATPQPPQA PPPQQQQQSS MDIIMTPEAG PKGPFWEEIS  120
AGMQRLGYNR SAKRCKEKWE NINKYFKKNG GTSNNAGNGG RSVGGASEGG GGSGGMQIQS  180
TNGSVAVGRF FGEGGGGGGG GGTAAKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01107020G0010
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0612057e-37BT061205.1 Zea mays full-length cDNA clone ZM_BFb0123A12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020191229.11e-42trihelix transcription factor GTL1-like isoform X1
RefseqXP_020191230.19e-43trihelix transcription factor GTL1-like isoform X2
TrEMBLM8A4E92e-43M8A4E9_TRIUA; Trihelix transcription factor GT-2
STRINGTraes_5BL_590637F31.13e-45(Triticum aestivum)
STRINGTRIUR3_33328-P13e-44(Triticum urartu)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.24e-21Trihelix family protein