PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01128678G0010
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB
Protein Properties Length: 270aa    MW: 29302.6 Da    PI: 9.9324
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01128678G0010genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.55.5e-172065147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ede+l ++v+++G+ +W+++a+++  gR+ k+c++rw++ 
  PH01128678G0010 20 RGHWRPAEDEKLRQLVEKYGPQNWNSVAEKLE-GRSSKSCRLRWFNQ 65
                     899*****************************.***********996 PP
2Myb_DNA-binding59.95.7e-1973116247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       ++T+eE+e+l+ a++ +G++ W++Iar+++ gRt++ +k++w+ +
  PH01128678G0010  73 RPFTEEEEERLLVAHRVHGNK-WALIARHFP-GRTDNAVKNHWHVV 116
                      69*******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.5281566IPR017930Myb domain
SuperFamilySSF466894.87E-3018113IPR009057Homeodomain-like
SMARTSM007171.6E-141968IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-262173IPR009057Homeodomain-like
PfamPF139215.0E-172383No hitNo description
CDDcd001671.66E-142364No hitNo description
PROSITE profilePS5129427.27167121IPR017930Myb domain
SMARTSM007179.5E-1671119IPR001005SANT/Myb domain
CDDcd001671.68E-1374114No hitNo description
Gene3DG3DSA:1.10.10.601.9E-2174116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MASSSTTNTS DGAKSSSCPR GHWRPAEDEK LRQLVEKYGP QNWNSVAEKL EGRSSKSCRL  60
RWFNQLDPRI NKRPFTEEEE ERLLVAHRVH GNKWALIARH FPGRTDNAVK NHWHVVRARR  120
SRRLLAKASS LTAFGGGGGG QIEFGSASST GSLCFGFSKL SSGGGLFGSS AESAAAAPTS  180
PLFNSYGNGT SSNMSLVGTS LEAAKYSYGG QQPIMAPALS ITFSSSREAL ALDGLSYGHH  240
RKDYHDDDDQ TMKRKQDVPF IDFLGVGVSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-29201207107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01128678G0010
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0928530.0FP092853.1 Phyllostachys edulis cDNA clone: bphyem102e11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827950.11e-114myb-related protein A-like
TrEMBLA0A2T7CMD61e-115A0A2T7CMD6_9POAL; Uncharacterized protein
STRINGSi026751m1e-113(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.16e-61myb domain protein 52