PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01143550G0010
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family GRAS
Protein Properties Length: 272aa    MW: 30115.4 Da    PI: 7.0038
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01143550G0010genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS267.83.5e-821926980333
             GRAS  80 alklfsevsPilkfshltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakf 168
                      al l +e++P+l+f+h++aN  Ilea+ege+ vH++D++++     G QW  Ll+ La+R+ ++p+++R+Tgvg+    + ++++++g+ L+  
  PH01143550G0010  19 ALALAYELCPYLRFAHFVANASILEAFEGESNVHVVDLGMTlgldRGHQWRGLLDGLAARAsANPARVRVTGVGA----RMDTMRAIGRELEAH 108
                      556679*******************************98762222567*************55566*********....9************** PP

             GRAS 169 AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262
                      Aeelg+ +ef++ + ++le+l++++L+++ +Ea+a++++lqlh +++es    +   +vL++v++lsPk +v+veq+a hn++ Fl rf+eal+
  PH01143550G0010 109 AEELGMYLEFRA-IDRSLESLHIDDLDIDADEAVAISSILQLHCVVKESRGALN---SVLQTVRKLSPKAFVLVEQDAGHNGPFFLGRFMEALH 198
                      ************.699******************************88877777...8************************************ PP

             GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplseka 333
                      yy+a+fd+l+a lpr +  r+ +E++++g ei+nvv cega+r+erhe++ +Wr+r+++aGF+++p++  a
  PH01143550G0010 199 YYAAVFDALDAALPRYDARRARIEQFYFGAEIRNVVGCEGAARVERHERADQWRRRMSRAGFQSIPIKMAA 269
                      *****************************************************************998766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098551.3871272IPR005202Transcription factor GRAS
PfamPF035141.2E-7919269IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MAFCIPPSCA GRDGARGEAL ALAYELCPYL RFAHFVANAS ILEAFEGESN VHVVDLGMTL  60
GLDRGHQWRG LLDGLAARAS ANPARVRVTG VGARMDTMRA IGRELEAHAE ELGMYLEFRA  120
IDRSLESLHI DDLDIDADEA VAISSILQLH CVVKESRGAL NSVLQTVRKL SPKAFVLVEQ  180
DAGHNGPFFL GRFMEALHYY AAVFDALDAA LPRYDARRAR IEQFYFGAEI RNVVGCEGAA  240
RVERHERADQ WRRRMSRAGF QSIPIKMAAK AR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-47627262335GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01143550G0010
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814052.10.0DELLA protein RGL1-like
TrEMBLA0A2T7DCV41e-180A0A2T7DCV4_9POAL; Uncharacterized protein
STRINGSi000959m1e-179(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56403354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.19e-57RGA-like 1