PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01149019G0010
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C3H
Protein Properties Length: 140aa    MW: 15676.3 Da    PI: 6.2527
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01149019G0010genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.93.5e-086587527
                     --SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
                     +C ++ ++G CkyG +C ++H+p
  PH01149019G0010 65 NCAYYVKFGSCKYGMNCEYNHPP 87
                     5********************97 PP
2zf-CCCH29.21.6e-09116140125
                      --S---SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                      ++++ C ++ ++G CkyG +CkF+H
  PH01149019G0010 116 PGEPDCTYYVKFGSCKYGMNCKFNH 140
                      5789********************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.6296088IPR000571Zinc finger, CCCH-type
SMARTSM003560.136087IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-56487IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-66587IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.432115140IPR000571Zinc finger, CCCH-type
SMARTSM003561.7115140IPR000571Zinc finger, CCCH-type
PfamPF006426.9E-7117140IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-5120140IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MGNSEAKHRA SPITPSSDDS VSSLSMQFAN SARPDDPPNP EPSSGKKQEQ AAEKDEYPRR  60
RGLLNCAYYV KFGSCKYGMN CEYNHPPKAS GRPDPAGEKQ QEQEEAPAEP EYLWRPGEPD  120
CTYYVKFGSC KYGMNCKFNH
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01149019G0010
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0A9IRL02e-27A0A0A9IRL0_ARUDO; Uncharacterized protein
STRINGOPUNC06G15040.17e-24(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2234747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16540.25e-17zinc finger nuclease 3