PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01153193G0010
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family Trihelix
Protein Properties Length: 158aa    MW: 17922.3 Da    PI: 4.4635
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01153193G0010genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix46.87.6e-151394887
         trihelix 48 kqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
                     k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a
  PH01153193G0010  1 KRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 39
                     69*********************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.1E-8240No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
KRCKEKWENI NKYFKKVKES NKKRPEDSKT CPYFHQLDAL YRNKAALNST SGGGGGGRQG  60
GHGCGADLAY GAAAPAAQDI MKEMMEQRQP QVQQQQAAIN SYNRMDGGAD SDNMDEDEDE  120
DEDYDDEDDD DDVDGNKMQY EIQFQRQQQQ PPQHHNVV
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01153193G0010
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3544261e-65AK354426.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1007E05.
GenBankAK3615071e-65AK361507.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1142F04.
GenBankAK3727131e-65AK372713.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3010E21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012698336.16e-29LOW QUALITY PROTEIN: trihelix transcription factor GTL1
TrEMBLM8A4E99e-32M8A4E9_TRIUA; Trihelix transcription factor GT-2
STRINGTRIUR3_33328-P11e-32(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.16e-25Trihelix family protein