PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01160280G0010
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family B3
Protein Properties Length: 153aa    MW: 17299.9 Da    PI: 10.3713
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01160280G0010genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3361.2e-1187153473
                      E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT CS
               B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkang 73 
                      + +++ +l+++ +++ +  ++++g++  +++tl+   +s rsW+v++  r      ++++GWkeF+++n+
  PH01160280G0010  87 KNITARALSHN-FTIGRFVCASNGIPASCTITLKTSAQSKRSWKVTF--RTANTYSYFKSGWKEFCRDNK 153
                      55667777777.*************999988888888999*******..77777789***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.3E-1279153IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-983153IPR015300DNA-binding pseudobarrel domain
PfamPF023628.6E-989153IPR003340B3 DNA binding domain
PROSITE profilePS508639.841115153IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MVFTVKVFEL SGCEKEYCDA APSVHIADEK ALSDMPQEKN KQPEVPLIGR KRNRKSECAS  60
RAGDKKPECS PTYMNKKKKA PRHLITKNIT ARALSHNFTI GRFVCASNGI PASCTITLKT  120
SAQSKRSWKV TFRTANTYSY FKSGWKEFCR DNK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01160280G0010
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187