PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01188189G0010
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C3H
Protein Properties Length: 144aa    MW: 16247.3 Da    PI: 7.1637
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01188189G0010genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.3e-07105130326
                      S---SGGGGTS...--TTTTT-SS-SS CS
          zf-CCCH   3 telCrffartG...tCkyGdrCkFaHg 26 
                       e+C++f+r      C++G++C+F+Hg
  PH01188189G0010 105 GEPCPDFRR-RpgaACPRGNTCPFSHG 130
                      699****99.558*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.089102132IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-5102134IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-5106130IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MVSREQHTHE HLLLDPAALG VSWADPAALE IPPQLLASLG EYLIAGRGGY GDAEAEAEAD  60
DEFMMYEFKV RRCARARSHE WTACPYAHPG EAARRRDPRR VAYTGEPCPD FRRRPGAACP  120
RGNTCPFSHG TFELWLHPAR YRTR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01188189G0010
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1095961e-123AC109596.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1593_C11, complete sequence.
GenBankAK1082491e-123AK108249.1 Oryza sativa Japonica Group cDNA clone:002-140-H10, full insert sequence.
GenBankAP0149611e-123AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126131e-123CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
GenBankEU8475211e-123EU847521.1 Oryza sativa Japonica Group clone OsLS333 zinc finger protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021303637.19e-85zinc finger CCCH domain-containing protein 37-like
SwissprotQ65X921e-74C3H37_ORYSJ; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A1Z5R4P24e-83A0A1Z5R4P2_SORBI; Uncharacterized protein
STRINGSi022958m2e-75(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112091926
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.14e-37C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]