PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01194034G0010
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family GRAS
Protein Properties Length: 158aa    MW: 16726.9 Da    PI: 5.3077
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01194034G0010genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS45.31.5e-1478150274
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekns 74 
                       +lLl+cAe v+ ++l +a++lL ++ elasp g++ +R+aayf  AL ar+++s  + y+ l+ ++ ++ +s
  PH01194034G0010  78 LNLLLRCAESVAMDQLPEARNLLPEIAELASPFGSSPERVAAYFGDALCARVLSSYLGAYSPLALRPLADAQS 150
                      689**********************************************************999988876554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098512.52751158IPR005202Transcription factor GRAS
PfamPF035145.2E-1278150IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MLQGVLSRAP GTDAAAAMKA KRGVSASASP EDEERTRGKR QQLHSYAADG VQQGLVVAAG  60
EEEKVEAEAA ETRGLRLLNL LLRCAESVAM DQLPEARNLL PEIAELASPF GSSPERVAAY  120
FGDALCARVL SSYLGAYSPL ALRPLADAQS RRISGAFQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-1660158199Protein SCARECROW
5b3h_D2e-1660158199Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01194034G0010
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1201401e-102AK120140.1 Oryza sativa Japonica Group cDNA clone:J013027P17, full insert sequence.
GenBankAP0038661e-102AP003866.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1092_A07.
GenBankAP0149631e-102AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126151e-102CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020200232.13e-60scarecrow-like protein 23 isoform X1
SwissprotQ9FHZ12e-24SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A3B6DAG01e-60A0A3B6DAG0_WHEAT; Uncharacterized protein
TrEMBLA0A453B9C01e-60A0A453B9C0_AEGTS; Uncharacterized protein
STRINGTraes_2BS_015167E00.14e-61(Triticum aestivum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.12e-22GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]