PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01278028G0010
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 92aa    MW: 10216.7 Da    PI: 10.993
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01278028G0010genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY51.71.8e-166591228
                     --SS-EEEEEEE--TT-SS-EEEEEE- CS
             WRKY  2 dDgynWrKYGqKevkgsefprsYYrCt 28
                      D+y+WrKYGqK++kgs++pr+YY+C+
  PH01278028G0010 65 ADEYSWRKYGQKPIKGSPYPRGYYKCS 91
                     69************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.1E-182062IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.3E-165391IPR003657WRKY domain
PROSITE profilePS5081117.2825992IPR003657WRKY domain
SuperFamilySSF1182909.55E-146291IPR003657WRKY domain
SMARTSM007741.2E-56492IPR003657WRKY domain
PfamPF031064.5E-126691IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
VSKGRSLLSS GKPPLSGHKR KPCAGAHSEA NTNGSRCHCS KRRKNRVKWT VRVPAISSKI  60
ADIPADEYSW RKYGQKPIKG SPYPRGYYKC ST
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts, when in complex with WRKY71, specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Represses specifically gibberellic acid (GA)-induced promoters in aleurone cells, probably by interfering with GAM1. {ECO:0000250|UniProtKB:Q0JEE2}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01278028G0010
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells (By similarity) (PubMed:15618416). Accumulates in response to uniconazole, a gibberellic acid (GA) biosynthesis inhibitor (By similarity). Repressed by GA (PubMed:15618416). {ECO:0000250|UniProtKB:Q0JEE2, ECO:0000269|PubMed:15618416}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0986511e-153FP098651.1 Phyllostachys edulis cDNA clone: bphylf056i18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001339110.13e-57uncharacterized protein LOC100273049
SwissprotQ6IEN13e-35WRK51_ORYSI; WRKY transcription factor WRKY51
TrEMBLB4FEI83e-56B4FEI8_MAIZE; Uncharacterized protein
STRINGGRMZM2G071907_P011e-56(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61738171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.19e-32WRKY DNA-binding protein 11