PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK00037.2
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family B3
Protein Properties Length: 341aa    MW: 38986.5 Da    PI: 9.4092
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK00037.2genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.24.6e-1659153195
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                f  +++ ++++ ++ lvlp kf++e+ ++ke+  +++l  ++gr W v+l++   +   r  l +GW+eF+ +n L++ D++ F+l+ +++ e  +k
  PK00037.2  59 FTATMSDAYATGRCYLVLPCKFVKEYINNKEC--EVRLLVLDGRCWFVQLKVrqANACPRAELCRGWREFALDNSLQASDICKFELTIDNGNEVSFK 153
                677899999999**************888777..7***************876644555578889********************985555555554 PP
2B341.62.2e-13247335699
                ..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3   6 tpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                ++s++     l +p kfa ++ +gk     +++      + W+vkl + k+  +y +++GW  F+ +n L  +D+++F+l++++++e++v++fr+
  PK00037.2 247 LRSNHVYGFKLPFPSKFAIQYlEGK----AKVMSLWVGEKYWDVKLMHFKS--SYEFGAGWAAFAVENFLMPKDVCIFELINNNQAEMKVHIFRQ 335
                4566666677999*****9995433....2466566677*******55555..588*************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.2E-2050156IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-2052156IPR015300DNA-binding pseudobarrel domain
CDDcd100172.34E-2157158No hitNo description
PfamPF023621.1E-1359152IPR003340B3 DNA binding domain
SMARTSM010199.3E-1059156IPR003340B3 DNA binding domain
PROSITE profilePS5086312.74659160IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-18237336IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.22E-19238336IPR015300DNA-binding pseudobarrel domain
CDDcd100178.73E-13241334No hitNo description
PROSITE profilePS5086311.053242336IPR003340B3 DNA binding domain
PfamPF023621.7E-11243335IPR003340B3 DNA binding domain
SMARTSM010196.1E-5243336IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
XFLFYDAAEL SARTKGSQSC KVESCDIVNK RNGLKPFISF AKTSAHKGPS SSQTKRPSFT  60
ATMSDAYATG RCYLVLPCKF VKEYINNKEC EVRLLVLDGR CWFVQLKVRQ ANACPRAELC  120
RGWREFALDN SLQASDICKF ELTIDNGNEV SFKVSIEKDH DDDDAYNMKV ANKRKAITPS  180
KLERNPYVKV ESSFAHHNMN IKKEQVEIKV EPNISDMSMK LKSDNQGRAS KVASKFFSNN  240
PYFHVVLRSN HVYGFKLPFP SKFAIQYLEG KAKVMSLWVG EKYWDVKLMH FKSSYEFGAG  300
WAAFAVENFL MPKDVCIFEL INNNQAEMKV HIFRQSSLAQ Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-1622133427141B3 domain-containing transcription factor VRN1
4i1k_B1e-1622133427141B3 domain-containing transcription factor VRN1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1754236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.11e-19related to vernalization1 1