PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK00134.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family FAR1
Protein Properties Length: 875aa    MW: 98911.2 Da    PI: 6.4806
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK00134.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR152.61.5e-1663136290
       FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                fY+eYA +vGF+ +   s++sk +g+i++r+f C + g r++ +               +C+a+lkv+++ ++kw+vtk+++eH+H+l+
  PK00134.1  63 FYDEYAIRVGFHSKAGPSSRSKSDGSIISREFICGRDGVRRQAD---------------SCEAMLKVELKGQDKWVVTKFVKEHSHSLV 136
                9**************************************98853...............6***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.9E-1363136IPR004330FAR1 DNA binding domain
PfamPF105512.1E-29273365IPR018289MULE transposase domain
PROSITE profilePS5096611.226551587IPR007527Zinc finger, SWIM-type
PfamPF044343.6E-12551584IPR007527Zinc finger, SWIM-type
SMARTSM005751.4E-7562589IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 875 aa     Download sequence    Send to blast
MDVDVIDVEG MSHRAMANDG DAEPNASRDS STAETITVHD DDDGIGEPYL GMEFDSEDAA  60
KFFYDEYAIR VGFHSKAGPS SRSKSDGSII SREFICGRDG VRRQADSCEA MLKVELKGQD  120
KWVVTKFVKE HSHSLVNPNK LHYIRPRRHF VGTAKTVSEA YQGTGAVPSG VMFVSMDGNR  180
SSAEKNSGVR HSPTEFNRSV KNSATMNYAV NPFNRKRTLG RDAQNLLEYF KKMQAENPGF  240
FYAIQLDEEN RMTNVFWADA RSRTAYSHFG DAVTLDTTYR VNQSRVPFAP FTGVNHHGQT  300
ILFGCALLLD ESEATFTWLF KTFLTAMNDC PPTSITTDQD RAIQTAVASV FPESRHRISK  360
WHVLREGQEK LAHVCHAHPN FQSELYNCIN LTETIEEFES SWNFIIDKYD LRRNDWLLTL  420
YNARDKWVPV YFRDSFFAAI SSNLGYDGSF FEGYVNQQTT LPTFFRQYER ALESCFEKET  480
EADFDTICNT PVLRTPSPME KQAANLYTRK IFTKFQEELV ETFVYTANKI EGDGAISTFR  540
VAKFEDDNKA YHVTLNYSEM KANCSCQMFE YSGILCRHVL TVFTVSNVLT LPSAYILKRW  600
TRNAKSGAGI DEHSGDSHAH ESLTLRYNNL CREAIRYAEE GAIATETYNA AMNALRDGGK  660
KIVIAKKNAA KVAPPCTESY DDRRNSTLTS DSTPLLWPRH DEVLRRFNLN DASAPLQTVA  720
DLNLPRMGPV SLHRDDGTPE NMVVLPCLKS MTWVMENKNS TPGNRVAVIN LKLQDYSRTP  780
SAESEVKFQL SRVSLEPMLR SMAYISEQLS TPANKVAVIN LKLQDTETTS GESEVKFQVS  840
KDTLGAMLRS MAYIREQLSN PVDMPLEPLA KKQRK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024022375.10.0protein FAR1-RELATED SEQUENCE 3
SwissprotQ9ZVC90.0FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLW9R5U70.0W9R5U7_9ROSA; Protein FAR1-RELATED SEQUENCE 3
STRINGXP_010097934.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.20.0FAR1-related sequence 3
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]