PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK00134.2
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family FAR1
Protein Properties Length: 878aa    MW: 99708.1 Da    PI: 6.6617
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK00134.2genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR152.81.3e-1663137290
       FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                fY++Y+++vGFs+ + + ++sk +g i++ +f Cs+e +++++ ++              C+a+l++++++++ w+vtk+ ++HnH++a
  PK00134.2  63 FYDAYGRRVGFSIHVGQFSRSKPDGPIVTWEFACSREVFKRKNVES--------------CNAMLRLERKDQDSWVVTKFIEDHNHSMA 137
                9***************************************999877..............**************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-1363137IPR004330FAR1 DNA binding domain
PfamPF105511.1E-29269361IPR018289MULE transposase domain
PfamPF044343.6E-12546579IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096611.226546582IPR007527Zinc finger, SWIM-type
SMARTSM005751.4E-7557584IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 878 aa     Download sequence    Send to blast
MDAEAERERR EHHAGESTEL NKGEKQNTNE CLTGREQSVH VDDDNAKPHV GMEFDSEDAA  60
KTFYDAYGRR VGFSIHVGQF SRSKPDGPIV TWEFACSREV FKRKNVESCN AMLRLERKDQ  120
DSWVVTKFIE DHNHSMASPG KVHYLRPRRH FAGATKNVAD TLDLPSDIFV SADGNNVSHE  180
SNRVVRSVSP VEINRPSRNA GPINYIRPSS RKRTLGRDAQ NLLNYFKKMQ AENPGFFYAI  240
QLDDDNRMTN VFWADARSRA AYNYFGDSVI FDTMYRPNQY QVPFAPFTGV NNHGQMVLFG  300
CALLLDESES SFTWLFKTWL SAMNNRPPVS ITTDQDRAIQ VAVSQVFSET RHCICKWHIL  360
REGQERLAHI YLAQPSFYGE LYSCINFSET IEDFESSWAS LLERYELQRN EWLQAVYNAR  420
KQWAPVYFRG TFFAALSSSQ GVSSFFDGYV NQQTTIPLFF KQYEIALEHS LEKEIEADYD  480
TICTTPVLKT PSPMEQQAAN LYTKKVFAKF QEELVETFVY TANKIEGDGA ISTFRVAKFE  540
DDNKAYHVTL NYSEMKANCS CQMFEYSGIL CRHVLTVFTV SNVLTLPSAY ILKRWTRNAK  600
SGAGIDEHSG DSHAHESLTL RYNNLCREAI RYAEEGAIAT ETYNAAMNAL RDGGKKIVIA  660
KKNAAKVAPP CTESYDDRRN STLTSDSTPL LWPRHDEVLR RFNLNDASAP LQTVADLNLP  720
RMGPVSLHRD DGTPENMVVL PCLKSMTWVM ENKNSTPGNR VAVINLKLQD YSRTPSAESE  780
VKFQLSRVSL EPMLRSMAYI SEQLSTPANK VAVINLKLQD TETTSGESEV KFQVSKDTLG  840
AMLRSMAYIR EQLSNPVRNF SLVTLTYFGF GEGITINK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024026251.10.0protein FAR1-RELATED SEQUENCE 3-like
SwissprotQ9ZVC90.0FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLM5X6W30.0M5X6W3_PRUPE; Uncharacterized protein
STRINGXP_008231884.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.20.0FAR1-related sequence 3
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]