PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK00134.3

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

FAR1

Protein Properties

Length: 853aa MW: 96843 Da PI: 6.5535

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK00134.3	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	52.8	1.3e-16	63	137	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++Y+++vGFs+ + + ++sk +g i++ +f Cs+e +++++ ++ C+a+l++++++++ w+vtk+ ++HnH++a PK00134.3 63 FYDAYGRRVGFSIHVGQFSRSKPDGPIVTWEFACSREVFKRKNVES--------------CNAMLRLERKDQDSWVVTKFIEDHNHSMA 137 9*************************************999877..............************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-13	63	137	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.1E-29	269	361	IPR018289	MULE transposase domain
Pfam	PF04434	2.5E-11	546	580	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	11.251	546	582	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.6E-8	557	584	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 853 aa Download sequence Send to blast
MDAEAERERR EHHAGESTEL NKGEKQNTNE CLTGREQSVH VDDDNAKPHV GMEFDSEDAA 60 KTFYDAYGRR VGFSIHVGQF SRSKPDGPIV TWEFACSREV FKRKNVESCN AMLRLERKDQ 120 DSWVVTKFIE DHNHSMASPG KVHYLRPRRH FAGATKNVAD TLDLPSDIFV SADGNNVSHE 180 SNRVVRSVSP VEINRPSRNA GPINYIRPSS RKRTLGRDAQ NLLNYFKKMQ AENPGFFYAI 240 QLDDDNRMTN VFWADARSRA AYNYFGDSVI FDTMYRPNQY QVPFAPFTGV NNHGQMVLFG 300 CALLLDESES SFTWLFKTWL SAMNNRPPVS ITTDQDRAIQ VAVSQVFSET RHCICKWHIL 360 REGQERLAHI YLAQPSFYGE LYSCINFSET IEDFESSWAS LLERYELQRN EWLQAVYNAR 420 KQWAPVYFRG TFFAALSSSQ GVSSFFDGYV NQQTTIPLFF KQYEIALEHS LEKEIEADYD 480 TICTTPVLKT PSPMEQQAAN LYTKKVFAKF QEELVETFVY TANKIEGDGV VSKFRVAKYE 540 HDDKAYIVSL NISEMKANCS CQMFEYSGIL CRHILTVFTV TNVLTLPSHY ILKRWTRNAK 600 AALGQDESTE DMQGIESLTL RFNNLCREAI KYAQEGAVAV ETYIAAMSAL REGSKKVSAV 660 KKNVAEITTA SQGSGISQED SNRKVHLPAA DMVSTLWPWQ EAMPHRFNLN DAGIPISDFS 720 SMGPVSIHRD GGTSDNTVVL TCFKSMTWVI ENSNSTQDSK VAVINLKLQD YGKTPSGETE 780 VQFRLTRVTL EPMLRSMAYI SQQLSTPANR VAVINLKLQD TKTTTGETEV KFQVSRDTLG 840 SMLRSMAYIR EQL

Sequence ? help Back to Top

Protein Sequence Length: 853 aa Download sequence Send to blast

MDAEAERERR EHHAGESTEL NKGEKQNTNE CLTGREQSVH VDDDNAKPHV GMEFDSEDAA  60
KTFYDAYGRR VGFSIHVGQF SRSKPDGPIV TWEFACSREV FKRKNVESCN AMLRLERKDQ  120
DSWVVTKFIE DHNHSMASPG KVHYLRPRRH FAGATKNVAD TLDLPSDIFV SADGNNVSHE  180
SNRVVRSVSP VEINRPSRNA GPINYIRPSS RKRTLGRDAQ NLLNYFKKMQ AENPGFFYAI  240
QLDDDNRMTN VFWADARSRA AYNYFGDSVI FDTMYRPNQY QVPFAPFTGV NNHGQMVLFG  300
CALLLDESES SFTWLFKTWL SAMNNRPPVS ITTDQDRAIQ VAVSQVFSET RHCICKWHIL  360
REGQERLAHI YLAQPSFYGE LYSCINFSET IEDFESSWAS LLERYELQRN EWLQAVYNAR  420
KQWAPVYFRG TFFAALSSSQ GVSSFFDGYV NQQTTIPLFF KQYEIALEHS LEKEIEADYD  480
TICTTPVLKT PSPMEQQAAN LYTKKVFAKF QEELVETFVY TANKIEGDGV VSKFRVAKYE  540
HDDKAYIVSL NISEMKANCS CQMFEYSGIL CRHILTVFTV TNVLTLPSHY ILKRWTRNAK  600
AALGQDESTE DMQGIESLTL RFNNLCREAI KYAQEGAVAV ETYIAAMSAL REGSKKVSAV  660
KKNVAEITTA SQGSGISQED SNRKVHLPAA DMVSTLWPWQ EAMPHRFNLN DAGIPISDFS  720
SMGPVSIHRD GGTSDNTVVL TCFKSMTWVI ENSNSTQDSK VAVINLKLQD YGKTPSGETE  780
VQFRLTRVTL EPMLRSMAYI SQQLSTPANR VAVINLKLQD TKTTTGETEV KFQVSRDTLG  840
SMLRSMAYIR EQL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024026251.1	0.0	protein FAR1-RELATED SEQUENCE 3-like
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	M5X6W3	0.0	M5X6W3_PRUPE; Uncharacterized protein
STRING	XP_008231884.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]