PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK00315.2

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

bZIP

Protein Properties

Length: 260aa MW: 29081.5 Da PI: 6.0635

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK00315.2	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.5	3.8e-10	163	208	5	50
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l PK00315.2 163 KRAKRILANRQSAARSKERKARYITELERKVQTLQTEATTLSAQLT 208 9****************************************98775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.0E-15	159	223	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.461	161	224	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	7.74E-11	163	214	No hit	No description
Pfam	PF00170	7.6E-9	163	207	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	9.8E-11	163	217	No hit	No description
CDD	cd14703	6.49E-24	164	213	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MEMQDPSKPD LGPNPKPENK PFRSLTTTTM IMMSNPTPPF PARGSYHRRS QSEVQFRIPE 60 DLDLLSDPFD GPSGSFEELG SEDDLFCTYM DIEKFGSKLD DGPSGHKNDN VGGGDGGGDE 120 EKHARPRHRH SNSVDGSSSL DTIEAKKAMA PDKLAELWTI DPKRAKRILA NRQSAARSKE 180 RKARYITELE RKVQTLQTEA TTLSAQLTLF QRDTTGLSGE NTDLKLRLQA MEQQAQLRDG 240 MYGFKCLVFN LISWSSTLKE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010103645.1	1e-119	transcription factor RF2b
Swissprot	O22873	1e-100	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	W9RLD2	1e-117	W9RLD2_9ROSA; Transcription factor RF2b
STRING	XP_010103645.1	1e-118	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1548	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	1e-100	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]