PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK00358.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family MYB_related
Protein Properties Length: 120aa    MW: 14394 Da    PI: 7.711
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK00358.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.31.2e-101281948
                     TTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 19 lGggtWktIartmgkgRtlkqcksrwqkyl 48
                     lG++ W++Ia +++ gRt++++k++w+++l
        PK00358.1  1 LGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 28
                     7999.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-14128IPR009057Homeodomain-like
PfamPF002491.7E-8128IPR001005SANT/Myb domain
PROSITE profilePS5129418.936132IPR017930Myb domain
SuperFamilySSF466892.12E-9236IPR009057Homeodomain-like
CDDcd001671.43E-6328No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
LGNRWSLIAG RLPGRTDNEI KNYWNSHLSK KIMKQNKEKQ TKKKKKLAQE MIKEVNHNYH  60
NDYNHNHNGY YDNDIGCSKR NEIISIFDQD SYYLNSTLWD EPLNLEWMSN FLEVDETNNN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12946KKIMKQNKEKQTKKKKKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017979498.15e-25PREDICTED: transcription factor MYB114
TrEMBLA0A061GJK01e-23A0A061GJK0_THECC; Myb domain protein 23
STRINGEOY272392e-24(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.15e-14myb domain protein 82