PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK00386.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

C3H

Protein Properties

Length: 559aa MW: 64562.4 Da PI: 9.6474

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK00386.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27.6	5e-09	507	528	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +lCr++a+ G C yGd+CkF+H+ PK00386.1 507 KLCRYYAQ-GRCYYGDTCKFSHD 528 79****.***********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.720.30	2.1E-10	85	132	IPR003034	SAP domain
SuperFamily	SSF68906	2.38E-7	86	132	No hit	No description
Pfam	PF02037	1.2E-8	97	131	IPR003034	SAP domain
SMART	SM00513	0.0024	97	131	IPR003034	SAP domain
PROSITE profile	PS50800	9.946	97	131	IPR003034	SAP domain
PROSITE profile	PS50103	16.324	503	530	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.57E-7	503	528	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	5.9E-5	504	529	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.2E-7	507	531	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.6E-6	507	528	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 559 aa Download sequence Send to blast
MELEKAEENF FRTASQSDSE NGSDDSDEDP SYSIMEETQI KFSKLSLKKK TKASICDDID 60 VPNEEHPNGS YINPEELDEK DAKSLEEIQR KIEAGQLEKL KVDQCKIYLR KNGLRLTGNK 120 STLLQRIKEH LEIVNGEGDK KYPVSSFVVN CKGDACTGDV VLFEQNVYDM FNVASRRASG 180 PPCGTRMVAG RIVKESYGAA KQQHTFTIEV LWSKGEKPLP PLHPLLIKGR NLYRLKTLRQ 240 KWENEETRQK ILMEKHSRGS LARSDRETRI LEKKNRKMQN GNRISKNEAG LQPCQRYSKP 300 AIPRENFVSS ISSENKEKEP MRLSTDSGKP AAATKARDAS STTNFSEVSS NPSLFLKNRR 360 QDNHVSINQH ASKNLVGNIN QARTHYDILD VHHIIGRQPP TYACSSMNQT KEPLKSGNHR 420 QPLTSVENYH PLSPSRRHNR TDNYHLLSPS RRQNGKDNYH PMSPSRRQNG IEKYHPMNPS 480 RRQNVTDNYY SYLPMCLSRK QNEMPQKLCR YYAQGRCYYG DTCKFSHDMR EEFGQRREER 540 WSYEQREFQG WSHDPRGRV

Sequence ? help Back to Top

Protein Sequence Length: 559 aa Download sequence Send to blast

MELEKAEENF FRTASQSDSE NGSDDSDEDP SYSIMEETQI KFSKLSLKKK TKASICDDID  60
VPNEEHPNGS YINPEELDEK DAKSLEEIQR KIEAGQLEKL KVDQCKIYLR KNGLRLTGNK  120
STLLQRIKEH LEIVNGEGDK KYPVSSFVVN CKGDACTGDV VLFEQNVYDM FNVASRRASG  180
PPCGTRMVAG RIVKESYGAA KQQHTFTIEV LWSKGEKPLP PLHPLLIKGR NLYRLKTLRQ  240
KWENEETRQK ILMEKHSRGS LARSDRETRI LEKKNRKMQN GNRISKNEAG LQPCQRYSKP  300
AIPRENFVSS ISSENKEKEP MRLSTDSGKP AAATKARDAS STTNFSEVSS NPSLFLKNRR  360
QDNHVSINQH ASKNLVGNIN QARTHYDILD VHHIIGRQPP TYACSSMNQT KEPLKSGNHR  420
QPLTSVENYH PLSPSRRHNR TDNYHLLSPS RRQNGKDNYH PMSPSRRQNG IEKYHPMNPS  480
RRQNVTDNYY SYLPMCLSRK QNEMPQKLCR YYAQGRCYYG DTCKFSHDMR EEFGQRREER  540
WSYEQREFQG WSHDPRGRV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023901258.1	1e-143	zinc finger CCCH domain-containing protein 62-like
TrEMBL	A0A2P5B470	0.0	A0A2P5B470_PARAD; Zinc finger CCCH-type domain containing protein
STRING	XP_008380776.1	1e-134	(Malus domestica)
STRING	XP_010104610.1	1e-135	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11652	22	24