PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK00415.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

FAR1

Protein Properties

Length: 867aa MW: 99999.5 Da PI: 6.6611

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK00415.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	80	4.3e-25	202	289	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YA+e+GFsvrk k + +n+ i kr+f Cs+eg+++++ + +++++ +r+etrtgC+a+++++ e dgkw++++++leHnHel PK00415.1 202 NFYKKYAEEIGFSVRKGKVVRL-TNRAIRKRNFLCSREGFKSRKISFDKTTKYERKETRTGCEACIQLTVE-DGKWVISNVVLEHNHELE 289 6***************9998.7888**************999999***************9.**************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.0E-22	202	289	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.8E-13	394	481	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.075	677	709	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.4E-7	684	711	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	2.3E-4	685	709	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 867 aa Download sequence Send to blast
MREIGDSSSA GSTPPPPPPP VSFDHFSPTS FFADDPVTTD HHDPNKAANN SDHDELWKHL 60 ADDGWCFFSD NMPHGDGDDS QLFTSGRATA SEPLLQKNAT SRRPPLPSSK LKHKVIGMDN 120 RRDLGTVTAY SSPHPSPPRK EWDNSNRNPS LIQSLASEND RHEISSSENY SEDEIQSDLP 180 ENEKIKLPEI GMEFFYEEEA YNFYKKYAEE IGFSVRKGKV VRLTNRAIRK RNFLCSREGF 240 KSRKISFDKT TKYERKETRT GCEACIQLTV EDGKWVISNV VLEHNHELEK PRQSHAIEVP 300 PSSVKTTIND NYGYLGKENG TVQYLKRQSP YDSFNYTLDR TSNDVQKLMN LFSYLQVKDP 360 SFFYAIQVDN QNRSTNFFWR DCRSRMDYNY FGDVIVLDTT CRIDNMVYAL FWGLNHHQQY 420 VIFGCAILLE ETLDSFVWLL ESFKLSMDMY QPRTFYSMEE CEAMSTAIDM VFPKSEHRLS 480 VNSIKINARK HLPTYFEQPG FEVLFNKCIF DCTTNIEFEM HWNSLLEQYN LRENPWLTSL 540 NKLWKRWSHL FCKKTFSAGI ELMFDSNVTN MDLFFLNSSS KVVTLPDFVM QYVKDSKRRR 600 LKELHEDLRC HEIVNSRSRK GMEKHAEELY TCTMFEKFQE ELLDSLSLAI EEVTNSANIS 660 TFRLTEEGHK KEDIVTFDCL SSYVTCSCGK FESIGILCSH SIKVLNAKNI FQIPSQYVMK 720 RWTKSAKEGD NQALQVVDYE DHTSSNNQGK LSILSRNLVH KALNVISKSL GSEKSRKVVE 780 SHLDLASREV DNILKEKGSI IEHSNIIPNL DDVNYEDCYR IRNDSLGSVY VKSQKIASNS 840 SCINQEQQGS KYISKKSMKS RTSKISA

Sequence ? help Back to Top

Protein Sequence Length: 867 aa Download sequence Send to blast

MREIGDSSSA GSTPPPPPPP VSFDHFSPTS FFADDPVTTD HHDPNKAANN SDHDELWKHL  60
ADDGWCFFSD NMPHGDGDDS QLFTSGRATA SEPLLQKNAT SRRPPLPSSK LKHKVIGMDN  120
RRDLGTVTAY SSPHPSPPRK EWDNSNRNPS LIQSLASEND RHEISSSENY SEDEIQSDLP  180
ENEKIKLPEI GMEFFYEEEA YNFYKKYAEE IGFSVRKGKV VRLTNRAIRK RNFLCSREGF  240
KSRKISFDKT TKYERKETRT GCEACIQLTV EDGKWVISNV VLEHNHELEK PRQSHAIEVP  300
PSSVKTTIND NYGYLGKENG TVQYLKRQSP YDSFNYTLDR TSNDVQKLMN LFSYLQVKDP  360
SFFYAIQVDN QNRSTNFFWR DCRSRMDYNY FGDVIVLDTT CRIDNMVYAL FWGLNHHQQY  420
VIFGCAILLE ETLDSFVWLL ESFKLSMDMY QPRTFYSMEE CEAMSTAIDM VFPKSEHRLS  480
VNSIKINARK HLPTYFEQPG FEVLFNKCIF DCTTNIEFEM HWNSLLEQYN LRENPWLTSL  540
NKLWKRWSHL FCKKTFSAGI ELMFDSNVTN MDLFFLNSSS KVVTLPDFVM QYVKDSKRRR  600
LKELHEDLRC HEIVNSRSRK GMEKHAEELY TCTMFEKFQE ELLDSLSLAI EEVTNSANIS  660
TFRLTEEGHK KEDIVTFDCL SSYVTCSCGK FESIGILCSH SIKVLNAKNI FQIPSQYVMK  720
RWTKSAKEGD NQALQVVDYE DHTSSNNQGK LSILSRNLVH KALNVISKSL GSEKSRKVVE  780
SHLDLASREV DNILKEKGSI IEHSNIIPNL DDVNYEDCYR IRNDSLGSVY VKSQKIASNS  840
SCINQEQQGS KYISKKSMKS RTSKISA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	596	600	KRRRL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024018992.1	0.0	protein FAR1-RELATED SEQUENCE 7-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-77	FAR1-related sequence 5