PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK00466.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

GRAS

Protein Properties

Length: 123aa MW: 13768.6 Da PI: 4.6512

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK00466.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	103	4.3e-32	2	120	79	195
GRAS 79 aalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfe 177 a++l+++++P++ ++ ++aN+aI +a+ +++ +HiiD+++++ lQWp+L+++LasR+eg+p +lRiTg+ +++++ el++ + L + A++lgv+++ PK00466.1 2 EAFQLLYQTTPFIALGCMIANEAICQAATNKDYLHIIDLGMEHTLQWPSLIRTLASRQEGSPkQLRITGLIDEDQTLVAELKTSMNSLVEEANSLGVTLK 101 6899****************************************************88777*****9999******************** PP GRAS 178 fnvlvak.rledleleeLr 195 fn++ ++ + + ++ e+L+ PK00466.1 102 FNLISEQvTPSLFTKEKLD 120 97444355556666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	22.692	1	123	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.5E-29	2	120	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 123 aa Download sequence Send to blast
IEAFQLLYQT TPFIALGCMI ANEAICQAAT NKDYLHIIDL GMEHTLQWPS LIRTLASRQE 60 GSPKQLRITG LIDEDQTLVA ELKTSMNSLV EEANSLGVTL KFNLISEQVT PSLFTKEKLD 120 LRX

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010089231.1	2e-57	DELLA protein RGL1
TrEMBL	A0A2P5CB90	5e-60	A0A2P5CB90_TREOI; GRAS transcription factor
STRING	XP_010089231.1	9e-57	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13251	27	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54220.1	2e-16	GRAS family protein