PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK00562.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family C3H
Protein Properties Length: 168aa    MW: 20460.5 Da    PI: 10.8156
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK00562.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.22.5e-07326226
               -S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
               +++ Cr + +  tC++G+ C+F+H 
  PK00562.1  3 REATCRQYEE-NTCNRGGYCNFMHL 26
               6789**9999.*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.474228IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-5326IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
XFREATCRQY EENTCNRGGY CNFMHLKRIS RELRRELFGK SHRRHSRSRS RSPYRHHSYE  60
ERSRGSRGHS SRRHDDRDNY HESRSRRHRS ISPGHRRGRS GSRSPGHRRN RSPIREGSEE  120
RRAKIAQWNR EREEKENAND VGTDERKYDD KKHDNDYRQN GEDDYDNX
Functional Description ? help Back to Top
Source Description
UniProtNecessary for the splicing of pre-mRNA. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019436316.11e-61PREDICTED: splicing factor U2af small subunit B-like
RefseqXP_019436317.11e-61PREDICTED: splicing factor U2af small subunit B-like
RefseqXP_019436319.11e-61PREDICTED: splicing factor U2af small subunit B-like
RefseqXP_019436320.11e-61PREDICTED: splicing factor U2af small subunit B-like
SwissprotQ9ZQW82e-24U2AFA_ORYSJ; Splicing factor U2af small subunit A
TrEMBLA0A4P1RPJ62e-60A0A4P1RPJ6_LUPAN; Uncharacterized protein
STRINGEOY335795e-61(Theobroma cacao)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Domon C,Lorković ZJ,Valcárcel J,Filipowicz W
    Multiple forms of the U2 small nuclear ribonucleoprotein auxiliary factor U2AF subunits expressed in higher plants.
    J. Biol. Chem., 1998. 273(51): p. 34603-10
    [PMID:9852132]