PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK00670.3

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

HD-ZIP

Protein Properties

Length: 456aa MW: 50717.1 Da PI: 6.1492

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK00670.3	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.8	2.8e-21	56	111	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++k +++t++q++eLe++F+++++p++++r eL+++l+L+++qVk+WFqNrR+++k PK00670.3 56 KKKYHRHTPHQIQELESFFKECPHPDEKQRLELSRRLSLETKQVKFWFQNRRTQMK 111 79999************************************************999 PP
2	START	129.5	3.9e-41	266	448	2	164
HHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECT CS START 2 laeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetleviss 87 la +a++el+k+a+ae p+W kss e++n +e++++f++ + + +ea r+s vv+ ++ lve+l+d + +W e+++ +a+t+e is PK00670.3 266 LAMAAMDELLKLAQAEGPMWIKSSdgggkEMLNHEEYMRTFPPCIGakpngYVSEATRDSSVVIINSLALVETLMDAN-RWIEMFPclisRASTIEMISA 364 57799************************************99999**************************.***************** PP T......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEE CS START 88 g......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskv 164 g gal +m elq+lsplvp R f+R+++q+g+g+w++vdvS+d +++ + s+ +++lpSg+l++++++g+skv PK00670.3 365 GmggtrnGALGVMHVELQVLSPLVPlRPLKFIRFCKQHGDGVWAVVDVSIDINREALNAESYFQCRRLPSGCLVQDMPDGYSKV 448 ***************************************************988***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.01E-21	42	113	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.5E-22	42	113	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.524	53	113	IPR001356	Homeobox domain
SMART	SM00389	1.8E-18	55	117	IPR001356	Homeobox domain
CDD	cd00086	5.40E-20	56	113	No hit	No description
Pfam	PF00046	6.6E-19	56	111	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	88	111	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	30.827	256	448	IPR002913	START domain
SuperFamily	SSF55961	2.2E-23	257	448	No hit	No description
CDD	cd08875	7.09E-91	260	448	No hit	No description
SMART	SM00234	2.9E-12	265	456	IPR002913	START domain
Pfam	PF01852	1.0E-33	266	448	IPR002913	START domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 456 aa Download sequence Send to blast
RKMDTHGEMG LLGENFDLGM IGRIRDDGYE SRSGSDNLEG ASGDDQDAGD DQPPRKKKYH 60 RHTPHQIQEL ESFFKECPHP DEKQRLELSR RLSLETKQVK FWFQNRRTQM KTQLERHENI 120 ILRQENDKLR AENNMIKDAM SNPMCNQCGG PAIPGQISFE EHQLRIENAR LKDELSRICS 180 LANKFLGRPL SSLVAPLPLP SSASLELAMG RNGMGGLNVG PPLPMGLDLG DGVSSSAHMM 240 PLVKSSMGMS AFGNEIPFDR SMFIDLAMAA MDELLKLAQA EGPMWIKSSD GGGKEMLNHE 300 EYMRTFPPCI GAKPNGYVSE ATRDSSVVII NSLALVETLM DANRWIEMFP CLISRASTIE 360 MISAGMGGTR NGALGVMHVE LQVLSPLVPL RPLKFIRFCK QHGDGVWAVV DVSIDINREA 420 LNAESYFQCR RLPSGCLVQD MPDGYSKVNN QINNLV

Sequence ? help Back to Top

Protein Sequence Length: 456 aa Download sequence Send to blast

RKMDTHGEMG LLGENFDLGM IGRIRDDGYE SRSGSDNLEG ASGDDQDAGD DQPPRKKKYH  60
RHTPHQIQEL ESFFKECPHP DEKQRLELSR RLSLETKQVK FWFQNRRTQM KTQLERHENI  120
ILRQENDKLR AENNMIKDAM SNPMCNQCGG PAIPGQISFE EHQLRIENAR LKDELSRICS  180
LANKFLGRPL SSLVAPLPLP SSASLELAMG RNGMGGLNVG PPLPMGLDLG DGVSSSAHMM  240
PLVKSSMGMS AFGNEIPFDR SMFIDLAMAA MDELLKLAQA EGPMWIKSSD GGGKEMLNHE  300
EYMRTFPPCI GAKPNGYVSE ATRDSSVVII NSLALVETLM DANRWIEMFP CLISRASTIE  360
MISAGMGGTR NGALGVMHVE LQVLSPLVPL RPLKFIRFCK QHGDGVWAVV DVSIDINREA  420
LNAESYFQCR RLPSGCLVQD MPDGYSKVNN QINNLV

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269\|PubMed:10402424}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024028635.1	0.0	homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X2
Swissprot	Q0WV12	1e-172	ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBL	A0A2P5CZI4	0.0	A0A2P5CZI4_TREOI; Octamer-binding transcription factor
STRING	XP_010107411.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21740	2	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.2	1e-156	HD-ZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]