PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK00972.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

LBD

Protein Properties

Length: 67aa MW: 7121.13 Da PI: 9.0182

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK00972.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	74.9	1.5e-23	7	67	1	60
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamss 60 +C aCk+lrrkC+++C++apyf + +++fa+vhk+FGasnv+kll +lp+++r+da++s PK00972.1 7 SCGACKFLRRKCSSECIFAPYFGYDGaASHFAAVHKVFGASNVSKLLLHLPQHNRSDAATS 67 6*******************998868***************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	17.437	6	67	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.3E-22	7	67	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 67 aa Download sequence Send to blast
MTGLGSSCGA CKFLRRKCSS ECIFAPYFGY DGAASHFAAV HKVFGASNVS KLLLHLPQHN 60 RSDAATS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-21	3	67	7	70	LOB family transfactor Ramosa2.1
5ly0_B	1e-21	3	67	7	70	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. {ECO:0000269\|PubMed:17259263}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021296007.1	2e-37	LOB domain-containing protein 14-like
Swissprot	Q9LHS8	9e-31	LBD33_ARATH; LOB domain-containing protein 33
TrEMBL	A0A2P5BAL0	1e-36	A0A2P5BAL0_PARAD; Lateral organ boundaries domain containing protein
TrEMBL	A0A2P5CX80	1e-36	A0A2P5CX80_TREOI; Lateral organ boundaries domain containing protein
STRING	EOY18079	1e-36	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9196	32	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06080.1	4e-33	LOB domain-containing protein 33

Publications ? help Back to Top
Bargmann BO,Birnbaum KD,Brenner ED An undergraduate study of two transcription factors that promote lateral root formation. Biochem Mol Biol Educ, 2014 May-Jun. 42(3): p. 237-45 [PMID:24615800]