PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK01144.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

Dof

Protein Properties

Length: 246aa MW: 25606.4 Da PI: 8.2102

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK01144.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.5	2.9e-38	26	84	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 + l+cprCds ntkfCyynny+l qPr+fCk+CrryWt+GGalr++PvGgg+rkn k+ PK01144.1 26 PEPLPCPRCDSINTKFCYYNNYNLLQPRHFCKGCRRYWTHGGALRDIPVGGGTRKNTKR 84 57899***************************************************886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.4E-32	28	83	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.845	29	83	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	31	67	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	2.0E-21	33	84	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MPSESGDKKQ AARPQLSMGH LPPAHPEPLP CPRCDSINTK FCYYNNYNLL QPRHFCKGCR 60 RYWTHGGALR DIPVGGGTRK NTKRTRSSNS NSSSSSSSSS SMTHDHQLLP SKPLLPDFSL 120 VNTQTDSSAV SQAQVNLNNG SVAGGVGFTS LLNCQAPGGF LALGGFGLGV DEIGLGYGYG 180 GRGVWAFPEV GEFVNGGGGT AVGPGSTSGC NAWQQMNGSD GGLVDGGGDC SYWPDLAISM 240 SGKGLK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008220719.1	5e-69	PREDICTED: dof zinc finger protein DOF3.4
TrEMBL	A0A2P5D9Z5	4e-73	A0A2P5D9Z5_PARAD; Zinc finger, Dof-type
STRING	XP_008220719.1	2e-68	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2801	31	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50410.1	4e-30	OBF binding protein 1