PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK01156.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

ERF

Protein Properties

Length: 146aa MW: 15789.6 Da PI: 11.0098

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK01156.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	57	4.9e-18	74	124	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr ++ +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a ++++g PK01156.1 74 PVYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFSTPEMAARAHDVATLAIKG 124 68***998.******843...6*****************99888776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	2.1E-12	74	124	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.37E-21	75	133	IPR016177	DNA-binding domain
PROSITE profile	PS51032	22.537	75	132	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.4E-31	75	133	IPR001471	AP2/ERF domain
SMART	SM00380	8.7E-35	75	138	IPR001471	AP2/ERF domain
CDD	cd00018	3.69E-30	76	134	No hit	No description
PRINTS	PR00367	1.0E-10	76	87	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.0E-10	98	114	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 146 aa Download sequence Send to blast
MSFNPKFPES SETSTSISSS STSSSSSSSS LSSSGSLLML NNESKKIKKK NSSSSSSSSS 60 SARVRESGDC TKHPVYRGVR MRSWGKWVSE IREPRKKSRI WLGTFSTPEM AARAHDVATL 120 AIKGNSAFLN FPELHDSLPR PASLAP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	5e-19	68	132	7	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004501158.1	5e-47	dehydration-responsive element-binding protein 3
Refseq	XP_004517241.1	5e-47	dehydration-responsive element-binding protein 3-like
Refseq	XP_024165955.1	6e-47	dehydration-responsive element-binding protein 3-like
Refseq	XP_028777821.1	6e-47	ethylene-responsive transcription factor TINY-like
Refseq	XP_028779724.1	6e-47	ethylene-responsive transcription factor TINY-like
Swissprot	Q9LYD3	2e-46	DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBL	A0A1S2YAA7	1e-45	A0A1S2YAA7_CICAR; dehydration-responsive element-binding protein 3
TrEMBL	A0A2P6Q016	1e-45	A0A2P6Q016_ROSCH; Putative transcription factor AP2-EREBP family
TrEMBL	A0A3S5HSP9	1e-45	A0A3S5HSP9_ROSHC; Transcription factor tiny
TrEMBL	A0A3S8T925	2e-45	A0A3S8T925_FRAAN; Transcription factor ERF25
STRING	XP_004501158.1	2e-46	(Cicer arietinum)
STRING	XP_004517241.1	2e-46	(Cicer arietinum)
STRING	XP_004291182.1	3e-46	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF192	34	263

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11590.1	8e-44	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Galuschka C,Schindler M,Bülow L,Hehl R AthaMap web tools for the analysis and identification of co-regulated genes. Nucleic Acids Res., 2007. 35(Database issue): p. D857-62 [PMID:17148485]