PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK01305.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

G2-like

Protein Properties

Length: 109aa MW: 11785.5 Da PI: 9.2052

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK01305.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	111.9	3.1e-35	47	101	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQkYRl PK01305.1 47 KPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRL 101 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.4E-34	44	102	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.095	44	104	IPR017930	Myb domain
SuperFamily	SSF46689	1.97E-18	46	104	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.5E-25	47	102	IPR006447	Myb domain, plants
Pfam	PF00249	1.3E-9	49	100	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 109 aa Download sequence Send to blast
MYSAIHSLPL DGVLGSGGGH SHGDFQGSLD GTNLPGDACL VLTTDPKPRL RWTAELHERF 60 VDAVTQLGGP DKATPKTIMR TMGVKGLTLY HLKSHLQKYR LGKQSCKDS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-21	47	103	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-21	47	103	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-21	47	103	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-21	47	103	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-21	47	103	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-21	47	103	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-21	47	103	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-21	47	103	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-21	47	103	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-21	47	103	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-21	47	103	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-21	47	103	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021681835.1	6e-66	protein PHR1-LIKE 3-like
Swissprot	Q94A57	2e-60	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	A0A2P5CRT1	2e-66	A0A2P5CRT1_PARAD; Octamer-binding transcription factor
TrEMBL	A0A2P5F3X6	2e-66	A0A2P5F3X6_TREOI; Octamer-binding transcription factor
STRING	cassava4.1_012160m	3e-65	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13367	21	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	1e-55	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]