PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK01489.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family B3
Protein Properties Length: 87aa    MW: 9859.94 Da    PI: 7.0835
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK01489.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B330.94.8e-1035861469
               T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHH CS
         B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFv 69
                +  lp kf++e +++   +++ +led  g++W+v++  ++ +g+  +++GW++F+
  PK01489.1 35 ECPFLPPKFVKELSLVA--GQKAILEDAYGEQWDVRI--SRVKGSLAFEQGWSKFA 86
               44689********9995..458***************..999999**********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.55E-102286IPR015300DNA-binding pseudobarrel domain
PfamPF023622.1E-72486IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.6E-103586IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.6013987IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
XCAQCTRSCW LIHEGKPACS ASSFLKIMFD MQEFECPFLP PKFVKELSLV AGQKAILEDA  60
YGEQWDVRIS RVKGSLAFEQ GWSKFAX
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024025037.12e-22B3 domain-containing protein Os01g0905400, partial
TrEMBLA0A2P5EIB01e-22A0A2P5EIB0_TREOI; B3 DNA binding domain containing protein
STRINGXP_010101937.11e-20(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF124762828