PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK01585.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

C3H

Protein Properties

Length: 113aa MW: 13007.8 Da PI: 8.0694

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK01585.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	29.6	1.2e-09	80	105	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yktelC++++ C G++C FaHg PK01585.1 80 YKTELCPYYLGANSCVNGESCEFAHG 105 9************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50084	8.618	1	53	IPR004088	K Homology domain, type 1
CDD	cd00105	5.11E-6	4	54	No hit	No description
Pfam	PF00013	4.4E-6	4	53	IPR004088	K Homology domain, type 1
Gene3D	G3DSA:3.30.1370.10	5.6E-6	5	56	IPR004088	K Homology domain, type 1
SuperFamily	SSF54791	1.43E-6	5	70	IPR004088	K Homology domain, type 1
Gene3D	G3DSA:4.10.1000.10	7.4E-12	77	110	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0034	79	106	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.521	79	107	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.83E-8	79	110	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.5E-6	80	105	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003723	Molecular Function	RNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 113 aa Download sequence Send to blast
MAVKISGRGN INLQYISEKT NAKVFPLLDV EPERDVFRIV GTKQQVNEAV DMFHRLAKDI 60 DVNHGYPMFW NKSNKKEREY KTELCPYYLG ANSCVNGESC EFAHGGHELR DKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06770.1	8e-08	C3H family protein