PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK01824.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family ERF
Protein Properties Length: 233aa    MW: 26361.7 Da    PI: 9.9341
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK01824.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.75.3e-12109150351
        AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                 +GV++ k + +W A I++      +k+++lg+ g+ eeAa+++++a+ 
  PK01824.1 109 MRGVYY-K-NMKWQAAIKVD-----KKQIHLGTVGSQEEAARLYDRAAF 150
                79**96.5.7*********4.....5********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003809.7E-5108165IPR001471AP2/ERF domain
PfamPF008472.7E-6108151IPR001471AP2/ERF domain
SuperFamilySSF541713.99E-8109153IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.5E-6110155IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MVSLRRRKLL GLCSGRNSFL TPLPRFSGNG KIPSNSSLNA KSISVHPIYS DEIKPPNGNT  60
SVKGEHGSTN VSDCGSLKED HNQQVAGPPI KRRKRHRRKN FQNQESCLMR GVYYKNMKWQ  120
AAIKVDKKQI HLGTVGSQEE AARLYDRAAF MCGREPNFEL SEVEKKELSQ FKWEEFLAMT  180
RHAITHKKHR RRVGTEPQKS PEPSPLQNDD SDSKIEENDL SGSEDVEADM SVS
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010104171.11e-111ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_024026403.11e-111ethylene-responsive transcription factor-like protein At4g13040
SwissprotQ56XP94e-47ERFL1_ARATH; Ethylene-responsive transcription factor-like protein At4g13040
TrEMBLA0A2P5AHQ21e-130A0A2P5AHQ2_PARAD; AP2/ERF transcription factor
STRINGXP_010104171.11e-110(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54573253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.12e-49ERF family protein