PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK01854.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family BBR-BPC
Protein Properties Length: 301aa    MW: 33910.4 Da    PI: 9.9548
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK01854.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind311.92.2e-9513011289
  GAGA_bind   1 mdddgsre..rnkg.yye..............pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkll 82 
                mdd  ++e  r+k  yy+              ++ ++l   +++++ms+iaerda+irern+a+sek++a+aerd+a  qrd+ +a+r+ al+erdn+l+
  PK01854.1   1 MDDGRHHEtsRHKVdYYRashspwnmmaphqvKEpNALV--MNKKIMSIIAERDAAIRERNAAVSEKNEALAERDEARRQRDEVMAQRDSALLERDNALA 98 
                777777767799998999999999999987663346676..99********************************************************* PP

  GAGA_bind  83 alllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkes 182
                al++++ s++ +l    +v +g+k +++  + + p+++  +++ +e+++++a+pi+   ++a +++++k+ + +k   ++++k ++kk +++  + ++ s
  PK01854.1  99 ALQVRNSSMSVTL--CGGVQRGVKRTNHPST-HMPNMALATYDSKETQITDAFPITVISSDAIKSPQTKRPKVNKGHSSRESKPPRKKVAED-LNRRATS 194
                ****988876554..4556678888887666.77**********************999999999998866655555555555444433333.3333333 PP

  GAGA_bind 183 aderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnp 282
                + ++ ++e++s+d++ln +++Des +PvPvCsCtG++rqCYkWG+GGWqS+CCtt++S+yPLP+ +++r+aR++grKmS+++f++lL++Laa+G+dls p
  PK01854.1 195 DGTKYRTEWDSQDVGLNLITFDESIMPVPVCSCTGVSRQCYKWGSGGWQSSCCTTNMSMYPLPQIPNKRHARMGGRKMSGSVFTRLLSRLAAQGHDLSIP 294
                3478************************************************************************************************ PP

  GAGA_bind 283 vDLkdhW 289
                +DL+++W
  PK01854.1 295 LDLREYW 301
                ******* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062171.9E-861301IPR010409GAGA-binding transcriptional activator
SMARTSM012267.1E-1171301IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MDDGRHHETS RHKVDYYRAS HSPWNMMAPH QVKEPNALVM NKKIMSIIAE RDAAIRERNA  60
AVSEKNEALA ERDEARRQRD EVMAQRDSAL LERDNALAAL QVRNSSMSVT LCGGVQRGVK  120
RTNHPSTHMP NMALATYDSK ETQITDAFPI TVISSDAIKS PQTKRPKVNK GHSSRESKPP  180
RKKVAEDLNR RATSDGTKYR TEWDSQDVGL NLITFDESIM PVPVCSCTGV SRQCYKWGSG  240
GWQSSCCTTN MSMYPLPQIP NKRHARMGGR KMSGSVFTRL LSRLAAQGHD LSIPLDLREY  300
W
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010095680.10.0protein BASIC PENTACYSTEINE4
RefseqXP_024020897.10.0protein BASIC PENTACYSTEINE4
RefseqXP_024020898.10.0protein BASIC PENTACYSTEINE4
SwissprotQ8S8C61e-115BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBLA0A2P5FQ730.0A0A2P5FQ73_TREOI; GAGA-binding transcriptional activator
STRINGXP_010095680.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69743348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21240.21e-108basic pentacysteine 4