PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK01935.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family ERF
Protein Properties Length: 237aa    MW: 27175.8 Da    PI: 7.8541
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK01935.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.6e-18127177255
        AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                +y+GVr+++ +g+++AeIrdp   + k  r++lg+f+t  +Aaka++ a+ k++g
  PK01935.1 127 HYRGVRRRP-WGKFAAEIRDP---NrKGSRVWLGTFDTDVDAAKAYDCAAFKMRG 177
                8********.**********9...6566**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.4E-32126186IPR001471AP2/ERF domain
CDDcd000182.49E-30126185No hitNo description
SMARTSM003802.4E-36127191IPR001471AP2/ERF domain
PfamPF008471.5E-13127177IPR001471AP2/ERF domain
PROSITE profilePS5103224.408127185IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-22127186IPR016177DNA-binding domain
PRINTSPR003674.7E-13128139IPR001471AP2/ERF domain
PRINTSPR003674.7E-13167187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:1902074Biological Processresponse to salt
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MKEVEEFSAL ELIRQHLLGD FTSTDSFINT LNSQIVSENH YKTHKPIITT TTSSYHFQSV  60
KQEYSQSESE SNSPVPDNNP HQFLHLIMEP KSETDPLLDI PSPNNSNKKK KTTTMKKEED  120
HSGEMKHYRG VRRRPWGKFA AEIRDPNRKG SRVWLGTFDT DVDAAKAYDC AAFKMRGRKA  180
ILNFPLEAGL SDPPKNTGRT RKRRRRSSDQ EEEEEFPHSQ PEISFNSGGG DNQSWTX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-28126186161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1200204RKRRR
2200206RKRRRRS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021634663.14e-67ethylene-responsive transcription factor ERF106-like
TrEMBLA0A2P5F3P47e-88A0A2P5F3P4_TREOI; AP2/ERF transcription factor
STRINGcassava4.1_015180m2e-66(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52573056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.17e-41ERF family protein