PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK02019.2

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

NAC

Protein Properties

Length: 106aa MW: 12139.6 Da PI: 10.8946

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK02019.2	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	100	3.2e-31	24	106	50	125
NAM 50 kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.......kgelvglkktLvfykgrapkgektdWvmhe 125 +k+++ ew+fF++rd+ky++g+r+nrat++gyWkatgkd+++ s+ ++ ++g+kktLvfy+grapkg++t+W+mhe PK02019.2 24 VIKTDDPEWFFFCPRDRKYPNGQRSNRATSAGYWKATGKDRTIRSRsyrsatnTTGAIGMKKTLVFYRGRAPKGVRTHWIMHE 106 4667888************************************987766555555***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	32.596	1	106	IPR003441	NAC domain
SuperFamily	SSF101941	1.26E-30	24	106	IPR003441	NAC domain
Pfam	PF02365	2.5E-15	28	106	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 106 aa Download sequence Send to blast
MGYVVEAIFG TGSKXFELFT GLSVIKTDDP EWFFFCPRDR KYPNGQRSNR ATSAGYWKAT 60 GKDRTIRSRS YRSATNTTGA IGMKKTLVFY RGRAPKGVRT HWIMHE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-26	31	106	72	139	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-26	31	106	72	139	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-26	31	106	72	139	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-26	31	106	72	139	NO APICAL MERISTEM PROTEIN
3swm_A	5e-26	31	106	75	142	NAC domain-containing protein 19
3swm_B	5e-26	31	106	75	142	NAC domain-containing protein 19
3swm_C	5e-26	31	106	75	142	NAC domain-containing protein 19
3swm_D	5e-26	31	106	75	142	NAC domain-containing protein 19
3swp_A	5e-26	31	106	75	142	NAC domain-containing protein 19
3swp_B	5e-26	31	106	75	142	NAC domain-containing protein 19
3swp_C	5e-26	31	106	75	142	NAC domain-containing protein 19
3swp_D	5e-26	31	106	75	142	NAC domain-containing protein 19
4dul_A	5e-26	31	106	72	139	NAC domain-containing protein 19
4dul_B	5e-26	31	106	72	139	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:18443413, PubMed:24329768). Calmodulin-regulated transcriptional repressor. Binds several synthetic promoters with randomly selected binding sites (PubMed:17947243). Functions synergistically with SNI1 as negative regulator of pathogen-induced PR1 expression and basal resistance to a virulent strain of P.syringae. Binds directly to the promoter of the PR1 gene (PubMed:22826500). Acts as positive regulator of innate immunity. Involved in the effector-triggered immunity (ETI) induction of immunity-related gene expression (PubMed:24329768). Mediates osmotic stress signaling in leaf senescence by up-regulating senescence-associated genes (PubMed:18443413). {ECO:0000269\|PubMed:17947243, ECO:0000269\|PubMed:18443413, ECO:0000269\|PubMed:22826500, ECO:0000269\|PubMed:24329768}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024026857.1	9e-51	protein NTM1-like 9 isoform X1
Swissprot	F4JN35	2e-40	NTL9_ARATH; Protein NTM1-like 9
TrEMBL	A0A2P5FIU1	1e-52	A0A2P5FIU1_TREOI; NAC domain containing protein
STRING	XP_010104895.1	3e-50	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21744	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35580.3	8e-43	NAC transcription factor-like 9

Publications ? help Back to Top
Zheng XY, et al. Spatial and temporal regulation of biosynthesis of the plant immune signal salicylic acid. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(30): p. 9166-73 [PMID:26139525] Guo T, et al. Lamin-like Proteins Negatively Regulate Plant Immunity through NAC WITH TRANSMEMBRANE MOTIF1-LIKE9 and NONEXPRESSOR OF PR GENES1 in Arabidopsis thaliana. Mol Plant, 2017. 10(10): p. 1334-1348 [PMID:28943325]