PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK02140.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

SBP

Protein Properties

Length: 188aa MW: 21275.2 Da PI: 8.7525

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK02140.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	136.2	1e-42	97	173	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC+adls++++yhrrhkvCe hsk+p+v++ g++qrfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+q+ PK02140.1 97 CLVDGCNADLSTCRDYHRRHKVCELHSKTPQVTIGGEKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQP 173 **************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.6E-35	90	158	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.052	94	171	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.22E-39	95	176	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	5.5E-32	97	170	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MDWNSKAPPS WEFTELEQQT FSNLGTVNGD YNKIIREDFS VDLKLGQVGN CSNNDLVDAT 60 WKESGVPRHV PSSSSSSPSG SSKRSRGSYN GSQTVSCLVD GCNADLSTCR DYHRRHKVCE 120 LHSKTPQVTI GGEKQRFCQQ CSRFHSLEEF DEGKRSCRKR LDGHNRRRRK PQPEPFSRYG 180 SLVSTYSX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	3e-30	87	170	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	153	170	KRSCRKRLDGHNRRRRKP

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305\|PubMed:12202040}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007209206.1	5e-94	squamosa promoter-binding-like protein 13A
Refseq	XP_020420484.1	5e-94	squamosa promoter-binding-like protein 13A
Swissprot	B9DI20	7e-50	SP13A_ARATH; Squamosa promoter-binding-like protein 13A
Swissprot	P0DI11	7e-50	SP13B_ARATH; Squamosa promoter-binding-like protein 13B
TrEMBL	A0A2P5FD90	1e-92	A0A2P5FD90_TREOI; SBP-box transcription factor
TrEMBL	M5WUE7	1e-92	M5WUE7_PRUPE; Uncharacterized protein
STRING	EMJ10405	2e-93	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2591	33	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	2e-49	SBP family protein

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Xu M, et al. Developmental Functions of miR156-Regulated SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) Genes in Arabidopsis thaliana. PLoS Genet., 2016. 12(8): p. e1006263 [PMID:27541584]