PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK02305.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family MYB
Protein Properties Length: 203aa    MW: 22903 Da    PI: 10.2071
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK02305.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.35.4e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd  l+ +++q G+g +W + ++++g++R++k+c++rw++yl
        PK02305.1 14 KGPWSPEEDATLKAYIEQNGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding37.94e-1269111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +++eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
        PK02305.1  69 GGFSEEEDNIICSLYLSIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                      569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.563962IPR017930Myb domain
SuperFamilySSF466892.01E-2611109IPR009057Homeodomain-like
SMARTSM007171.5E-111364IPR001005SANT/Myb domain
PfamPF002499.7E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.4E-241569IPR009057Homeodomain-like
CDDcd001678.85E-81662No hitNo description
PROSITE profilePS5129420.94763117IPR017930Myb domain
SMARTSM007171.6E-1067115IPR001005SANT/Myb domain
PfamPF002497.3E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-2370117IPR009057Homeodomain-like
CDDcd001674.34E-771113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDATLKAYIE QNGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPHIKHGG FSEEEDNIIC SLYLSIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGK  120
QRKEHAAAAA ANQAARRANN NNLMMMMNKP EIKREATNPS TTTTTITFDH HHQNNILLPT  180
TGGLMMSGNH NHQTLPYWPE LPX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-24111174108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004143035.15e-91PREDICTED: transcription factor RAX3-like
RefseqXP_010099411.15e-91transcription factor RAX3
SwissprotQ9M2Y91e-83RAX3_ARATH; Transcription factor RAX3
TrEMBLA0A2P5A7992e-99A0A2P5A799_PARAD; MYB transcription factor
STRINGXP_004159573.11e-90(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.15e-80myb domain protein 84
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]
  3. Pal S, et al.
    TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
    Plant Physiol., 2017. 175(2): p. 916-926
    [PMID:28827455]