PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK02322.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family C2H2
Protein Properties Length: 256aa    MW: 28146.1 Da    PI: 10.0169
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK02322.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-056688123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               + C++C+k F r  nL+ H r H
  PK02322.1 66 FICEICNKGFQRDQNLQLHRRGH 88
               89*******************88 PP
2zf-C2H212.30.0005142164123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                +kC +C+k +  +s+ k H + +
  PK02322.1 142 WKCDKCSKKYAVQSDWKAHSKIC 164
                58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.8E-76588No hitNo description
Gene3DG3DSA:3.30.160.605.7E-66588IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.8456688IPR007087Zinc finger, C2H2
SMARTSM003550.0226688IPR015880Zinc finger, C2H2-like
PfamPF121712.6E-56688IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
SMARTSM00355240107137IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.0E-4130163IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.8E-7137162No hitNo description
SMARTSM00355150142162IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009937Biological Processregulation of gibberellic acid mediated signaling pathway
GO:0010029Biological Processregulation of seed germination
GO:0010431Biological Processseed maturation
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MATELENSST VSGEASVSSS GNHTVVPPPA PPKSTAKKKR NLPGMPDPDA EVIALSPKTL  60
MATNRFICEI CNKGFQRDQN LQLHRRGHNL PWKLRQRTSK EVKKRVYVCP EASCVHHDPS  120
RALGDLTGIK KHFCRKHGEK KWKCDKCSKK YAVQSDWKAH SKICGTREYK CDCGTLFSRR  180
DSFITHRAFC DALAEESAKT HTPAPAQAPA PAQAPAQAAK APQKKDQTQL AENMNMESES  240
KAQLVKSSPP PAPAPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-36138199364Zinc finger protein JACKDAW
5b3h_F3e-36138199364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00592DAPTransfer from AT5G66730Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021888880.11e-137protein indeterminate-domain 2-like
SwissprotQ9LVQ71e-132IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLA0A2P5FXR51e-144A0A2P5FXR5_TREOI; TFIIH C1-like domain containing protein
STRINGevm.model.supercontig_158.11e-137(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.11e-108C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]