PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK02330.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family ERF
Protein Properties Length: 326aa    MW: 36558.1 Da    PI: 8.0595
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK02330.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.78.1e-20171221255
        AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                +y+GVr+++ +g+++AeIrdp   + k  r++lg+f ta eAaka+++a+ kl+g
  PK02330.1 171 HYRGVRQRP-WGKFAAEIRDP---NrKGSRVWLGTFETAIEAAKAYDRAAFKLRG 221
                8********.**********9...6566*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.25E-32170229No hitNo description
Gene3DG3DSA:3.30.730.101.4E-32170230IPR001471AP2/ERF domain
PROSITE profilePS5103224.223171229IPR001471AP2/ERF domain
PfamPF008474.9E-14171221IPR001471AP2/ERF domain
SMARTSM003806.1E-37171235IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-22171230IPR016177DNA-binding domain
PRINTSPR003671.4E-13172183IPR001471AP2/ERF domain
PRINTSPR003671.4E-13211231IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MANIDEFSKL QFIKQHLLGD LSSPLSNFPF GDCSTSSSES LIQVSDYLGS DFSGFESKPE  60
VVDLTTPKIL NMSNDNNNNN SNNNSFEFES KPRVFDLKRS NSEASCNSFE FDSKPQISNP  120
KSTDSSSPSS RKRSLKISLP AKTPEQWIQF GAPKPAVQVQ KPAVVHEEKK HYRGVRQRPW  180
GKFAAEIRDP NRKGSRVWLG TFETAIEAAK AYDRAAFKLR GSKAILNFPL EAGKCDEKEE  240
NVTVKVIEMK RRRQEEEETE AKPVVIEKKI KSTEAEDNSL SYLRDIPLTP SNWTAWDSDL  300
KGVFSVPPLS PLSPHPSLGF PQLMVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-31170230161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010107751.11e-103ethylene-responsive transcription factor 6
TrEMBLA0A2P5CVP01e-112A0A2P5CVP0_TREOI; AP2/ERF transcription factor
STRINGXP_010107751.11e-102(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108534109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.14e-55ethylene responsive element binding factor 5