PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK02334.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family bHLH
Protein Properties Length: 155aa    MW: 17023.4 Da    PI: 9.1875
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK02334.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.56.5e-0535741054
               HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
               + R +++  ++  L++l+ +      +K + a++L +A+eYI+ L
  PK02334.1 35 KERKENLGAKIVALQQLVSPY-----GKTDTASVLLEAMEYIQFL 74
               566777778889999999998.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.107.0E-92484IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.0452574IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0043180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-113187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.03E-43579No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MTEHKRSPCY VDQSSFSSSL VSSKRQKPDL SISTKERKEN LGAKIVALQQ LVSPYGKTDT  60
ASVLLEAMEY IQFLHEQVKV LSAPYLESTP PTKIQEMEAF KLRSRGLCLV PVSCTLGVAR  120
SNGADIWAPI KTTSPKFDTS SSSPSSSSIS HSQFH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010101389.21e-82transcription factor bHLH153 isoform X1
SwissprotQ7XJU22e-58BH153_ARATH; Transcription factor bHLH153
TrEMBLA0A2P5DWM36e-86A0A2P5DWM3_PARAD; Myc-type, basic helix-loop-helix (BHLH) domain containing protein
STRINGXP_010101389.12e-82(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108133138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.59e-57bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]