PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK02343.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family Trihelix
Protein Properties Length: 119aa    MW: 13775.5 Da    PI: 9.1858
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK02343.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix25.92.6e-0856119159
   trihelix   1 rWtkqevlaLiearr..emeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnk 59 
                +W+k+ + +Li+     ++++ +++++  ++ W++++k+    +++  +r+ kqCk++w+++n+
  PK02343.1  56 KWSKEATILLINRWLntSKDTIVESDQISAKFWDQIAKYFntnHKGEERRTGKQCKDRWNKINQ 119
                7**********965511555555667778999********9955555577***********985 PP
2Myb_DNA-binding21.65.1e-07871162346
                      -HHHHHHHHT......TTS-HHHHHHHHHH CS
  Myb_DNA-binding  23 tWktIartmg......kgRtlkqcksrwqk 46 
                       W+ Ia++++      ++Rt+kqck+rw+k
        PK02343.1  87 FWDQIAKYFNtnhkgeERRTGKQCKDRWNK 116
                      6****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.30649118IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.609.5E-556117IPR009057Homeodomain-like
PfamPF138372.1E-756118No hitNo description
CDDcd001670.0017386117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MASKIYTPSM KKSSVDLNLE TSSTSVSVTQ PANCVERLEN VDLHNEEKPS QESKLKWSKE  60
ATILLINRWL NTSKDTIVES DQISAKFWDQ IAKYFNTNHK GEERRTGKQC KDRWNKINQ