PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK02366.4

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

NAC

Protein Properties

Length: 201aa MW: 23183.7 Da PI: 9.8828

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK02366.4	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179.3	1e-55	15	160	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kge 98 lppGfrFhPtdee++++yL++kv ++++ + ++i+++d++k+ePwdLpk++k +ekewyfF++rd+ky+tg r+nrat+sgyWkatgkdke+++k PK02366.4 15 LPPGFRFHPTDEEIITYYLTEKVLNTNFIA-SAIADADLNKCEPWDLPKRAKMGEKEWYFFCQRDRKYPTGMRTNRATESGYWKATGKDKEIYNKgnI-- 111 79***********************877.78***********99999*************************************9650.. PP NAM 99 l..................vglkktLvfykgrapkgektdWvmheyrle 129 + vg+kktLvfykgrapkgek++Wvmheyrle PK02366.4 112 KnsllssssssssssstnlVGMKKTLVFYKGRAPKGEKSNWVMHEYRLE 160 3455566666667777777**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.75E-62	12	185	IPR003441	NAC domain
PROSITE profile	PS51005	57.874	15	184	IPR003441	NAC domain
Pfam	PF02365	3.9E-30	16	159	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
XSSSSDHNHN HLIDLPPGFR FHPTDEEIIT YYLTEKVLNT NFIASAIADA DLNKCEPWDL 60 PKRAKMGEKE WYFFCQRDRK YPTGMRTNRA TESGYWKATG KDKEIYNKGN IKNSLLSSSS 120 SSSSSSSTNL VGMKKTLVFY KGRAPKGEKS NWVMHEYRLE GKFSYYNLPK SAKDEWVVCR 180 VFHKNIGNNN NNIQKKIMNP X

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-51	13	185	15	166	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-51	13	185	15	166	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-51	13	185	15	166	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-51	13	185	15	166	NO APICAL MERISTEM PROTEIN
3swm_A	1e-51	13	185	18	169	NAC domain-containing protein 19
3swm_B	1e-51	13	185	18	169	NAC domain-containing protein 19
3swm_C	1e-51	13	185	18	169	NAC domain-containing protein 19
3swm_D	1e-51	13	185	18	169	NAC domain-containing protein 19
3swp_A	1e-51	13	185	18	169	NAC domain-containing protein 19
3swp_B	1e-51	13	185	18	169	NAC domain-containing protein 19
3swp_C	1e-51	13	185	18	169	NAC domain-containing protein 19
3swp_D	1e-51	13	185	18	169	NAC domain-containing protein 19
4dul_A	1e-51	13	185	15	166	NAC domain-containing protein 19
4dul_B	1e-51	13	185	15	166	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00518	DAP	Transfer from AT5G18270	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010088484.1	1e-108	NAC domain-containing protein 87
Swissprot	Q9FK44	6e-99	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	W9QN11	1e-106	W9QN11_9ROSA; NAC domain-containing protein 100
STRING	XP_010088484.1	1e-107	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF409	34	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.1	2e-97	Arabidopsis NAC domain containing protein 87

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]