PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK02373.2

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

HB-other

Protein Properties

Length: 680aa MW: 76885.8 Da PI: 8.168

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK02373.2	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	37.8	3.2e-12	7	56	8	57
-HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 t+ qle L +++ +n+yp++ ++e A+ gLt +q++ WF +R kek+ PK02373.2 7 TPVQLEGLDTMYLENKYPTQMDIENYAATAGLTSKQIQCWFVEKRRKEKR 56 899**********************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	7.8E-8	1	61	IPR001356	Homeobox domain
CDD	cd00086	2.71E-10	5	58	No hit	No description
Gene3D	G3DSA:1.10.10.60	8.9E-12	6	56	IPR009057	Homeodomain-like
Pfam	PF00046	1.9E-9	6	56	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.67E-11	6	60	IPR009057	Homeodomain-like
PROSITE profile	PS50071	12.665	7	57	IPR001356	Homeobox domain
SMART	SM00571	8.6E-9	346	405	IPR018501	DDT domain
PROSITE profile	PS50827	12.185	346	405	IPR018501	DDT domain
Pfam	PF02791	1.2E-8	349	402	IPR018501	DDT domain
Pfam	PF15612	1.4E-6	627	669	IPR028942	WHIM1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 680 aa Download sequence Send to blast
MEIKRKTPVQ LEGLDTMYLE NKYPTQMDIE NYAATAGLTS KQIQCWFVEK RRKEKRENVI 60 TISSNSTSKE KHAARKVVAR SLSSKRQKAS TTKNIISQDL FTPDYILRRV FRKDGPPLGV 120 EFDSPSSGDL LHCKDSEICY SSCKESQRAA KRTKVSKHAF INTICSGKNA PSKKHGMGKG 180 LMTAWRVINP HAGDYPTSID FTNEETGPSI SKSVARNPHI QARKPKNQKI LNIQGRLRDK 240 LQEKKKKKKF VKRREVKSYK DANQKPTGKT KCELALEGGH SLDNLNQISM LVDDEELESR 300 ELQAVLNRPW CSGHSTTGHQ DLLAKFPPNS VKMKQPFSMQ PWDSSPEIIK KLFKVFHFLY 360 TYSLVVDVCP FTLDEFAQAF HDKDSLLLGK IHVALLKHLL SDIELELNNE SLRHQSKSCN 420 YLALLHMVEN QDFSLEFWGR SLNPLTWTEI LRQILVASGF GAKQSSIQRE TFDKEVHLMV 480 KSGLHPGTLK GVLFQILLEQ GNNGLKVSDM AKSFRIVDLK LATTTEELEC LICSMLSSDI 540 TLFEKISPST YRLRINSILK KVEELQSDTE DSGAVDDGSS ESDAYSSDED SRCDAEDSTL 600 IEVMKLNKPK NQNGLSNNYT EIDESHPGES WLLGLMESEY SDLSTEEKLN VMVALIDLLR 660 AGSSIRMEVI IYLLALLSHE

Sequence ? help Back to Top

Protein Sequence Length: 680 aa Download sequence Send to blast

MEIKRKTPVQ LEGLDTMYLE NKYPTQMDIE NYAATAGLTS KQIQCWFVEK RRKEKRENVI  60
TISSNSTSKE KHAARKVVAR SLSSKRQKAS TTKNIISQDL FTPDYILRRV FRKDGPPLGV  120
EFDSPSSGDL LHCKDSEICY SSCKESQRAA KRTKVSKHAF INTICSGKNA PSKKHGMGKG  180
LMTAWRVINP HAGDYPTSID FTNEETGPSI SKSVARNPHI QARKPKNQKI LNIQGRLRDK  240
LQEKKKKKKF VKRREVKSYK DANQKPTGKT KCELALEGGH SLDNLNQISM LVDDEELESR  300
ELQAVLNRPW CSGHSTTGHQ DLLAKFPPNS VKMKQPFSMQ PWDSSPEIIK KLFKVFHFLY  360
TYSLVVDVCP FTLDEFAQAF HDKDSLLLGK IHVALLKHLL SDIELELNNE SLRHQSKSCN  420
YLALLHMVEN QDFSLEFWGR SLNPLTWTEI LRQILVASGF GAKQSSIQRE TFDKEVHLMV  480
KSGLHPGTLK GVLFQILLEQ GNNGLKVSDM AKSFRIVDLK LATTTEELEC LICSMLSSDI  540
TLFEKISPST YRLRINSILK KVEELQSDTE DSGAVDDGSS ESDAYSSDED SRCDAEDSTL  600
IEVMKLNKPK NQNGLSNNYT EIDESHPGES WLLGLMESEY SDLSTEEKLN VMVALIDLLR  660
AGSSIRMEVI IYLLALLSHE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024017927.1	0.0	homeobox-DDT domain protein RLT3, partial
TrEMBL	A0A2P5DDC1	0.0	A0A2P5DDC1_PARAD; Octamer-binding transcription factor
STRING	XP_010091138.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6118	15	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	1e-156	Homeodomain-like transcriptional regulator