PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK02473.4
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family HSF
Protein Properties Length: 61aa    MW: 7281.05 Da    PI: 10.2319
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK02473.4genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind71.81.3e-222612997
                  EES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
  HSF_DNA-bind 29 vvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97
                  vv+d+++f+ ++Lp+yFkh nf+SF+RQLn+YgF+kv+ ++         weF+++ F  g+k+ll++i
     PK02473.4  2 VVWDSHQFSMTLLPRYFKHGNFSSFIRQLNTYGFRKVDPDR---------WEFANEGFLGGQKHLLKTI 61
                  79************************************999.........****************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004158.9E-19261IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.6E-19261IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.77E-20261IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.9E-24259IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.2E-101325IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043401438IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-102638IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 61 aa     Download sequence    Send to blast
XVVWDSHQFS MTLLPRYFKH GNFSSFIRQL NTYGFRKVDP DRWEFANEGF LGGQKHLLKT  60
I
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021823631.11e-37heat shock factor protein HSF30 isoform X1
RefseqXP_021823639.11e-37heat shock factor protein HSF30 isoform X1
RefseqXP_021823648.11e-37heat shock factor protein HSF30 isoform X1
RefseqXP_021823654.11e-37heat shock factor protein HSF30 isoform X2
SwissprotP411521e-35HSF30_SOLPE; Heat shock factor protein HSF30
TrEMBLA0A251RAW56e-36A0A251RAW5_PRUPE; Uncharacterized protein
TrEMBLA0A251RB086e-36A0A251RB08_PRUPE; Uncharacterized protein
TrEMBLM5XZ218e-36M5XZ21_PRUPE; Uncharacterized protein
STRINGXP_008220491.19e-37(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.16e-37heat shock transcription factor A2
Publications ? help Back to Top
  1. Scharf KD,Rose S,Thierfelder J,Nover L
    Two cDNAs for tomato heat stress transcription factors.
    Plant Physiol., 1993. 102(4): p. 1355-6
    [PMID:8278556]