PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK02558.2

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

Protein Properties

Length: 158aa MW: 17925.9 Da PI: 8.9951

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK02558.2	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	49.9	5.8e-16	70	156	2	96
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 +k +++s+v+ +l lpkkf++ + +k e+++++ledesg++ + k+ + + l++GW++F a++L egD+vvF+l+ +f +v + PK02558.2 70 VKLMLHSHVSVGFWLGLPKKFCDMYL-PK-EDTMMVLEDESGQVCDAKY--LALK--VGLSAGWRGFSIAHNLVEGDVVVFHLVTPIKF--KVYI 156 68899***************9994.33.5679***********..4444..44*********************9764444..5555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	3.73E-23	63	158	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	5.5E-19	63	158	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.54E-26	67	158	No hit	No description
PROSITE profile	PS50863	11.378	69	158	IPR003340	B3 DNA binding domain
SMART	SM01019	8.0E-11	69	158	IPR003340	B3 DNA binding domain
Pfam	PF02362	9.8E-14	70	157	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 158 aa Download sequence Send to blast
XSKTFSIQSV LNLLEMYYLV TLPQSIIYSN KRKKVNVESL YNDPKAALSP TMQRAYEVQA 60 TLAPEFPSMV KLMLHSHVSV GFWLGLPKKF CDMYLPKEDT MMVLEDESGQ VCDAKYLALK 120 VGLSAGWRGF SIAHNLVEGD VVVFHLVTPI KFKVYIIR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008236526.1	1e-54	PREDICTED: B3 domain-containing protein Os01g0234100-like
Refseq	XP_020425151.1	1e-54	B3 domain-containing protein Os01g0234100
Swissprot	Q0JP99	4e-40	Y1341_ORYSJ; B3 domain-containing protein Os01g0234100
TrEMBL	A0A2P5CQR4	4e-70	A0A2P5CQR4_TREOI; B3 DNA binding domain containing protein
STRING	EMJ01456	7e-55	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3336	31	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	4e-40	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]