PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK02979.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family C3H
Protein Properties Length: 368aa    MW: 39824 Da    PI: 7.2643
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK02979.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.61e-082546426
               ---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH  4 elCrffartGtCkyGdrCkFaHg 26
               + C+f+a+ G C +G+rC+F H+
  PK02979.1 25 KVCKFWAE-GRCVRGGRCRFVHS 46
               57******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.3282148IPR000571Zinc finger, CCCH-type
SMARTSM003565.2E-52347IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-52546IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-52545IPR000571Zinc finger, CCCH-type
SuperFamilySSF509785.86E-4129368IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.107.1E-4046368IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003208.1E-55293IPR001680WD40 repeat
PfamPF004004.2E-45693IPR001680WD40 repeat
PROSITE profilePS5008211.07759102IPR001680WD40 repeat
PROSITE profilePS5029410.60159102IPR017986WD40-repeat-containing domain
PRINTSPR003206.9E-68094IPR020472G-protein beta WD-40 repeat
PROSITE patternPS0067808094IPR019775WD40 repeat, conserved site
SMARTSM00320130139178IPR001680WD40 repeat
SMARTSM003208.6E-4194230IPR001680WD40 repeat
PROSITE profilePS5029412.367200278IPR017986WD40-repeat-containing domain
PROSITE profilePS500828.904200230IPR001680WD40 repeat
PfamPF004000.016203230IPR001680WD40 repeat
PRINTSPR003206.9E-6217231IPR020472G-protein beta WD-40 repeat
SMARTSM003208.9E-9232269IPR001680WD40 repeat
PfamPF004007.2E-6234268IPR001680WD40 repeat
PROSITE profilePS5008212.179239278IPR001680WD40 repeat
PRINTSPR003206.9E-6256270IPR020472G-protein beta WD-40 repeat
SMARTSM00320110275329IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MGITYLRRRA SESVSGNVKS GSMEKVCKFW AEGRCVRGGR CRFVHSWSRG DLYSYLANLH  60
GHTKAVTGIA LPHSNSGDKL YTTSYDGKLY IWDCHTAKTT AVINFGVPIG CLINEGPWLF  120
IGLPNEIKVW NTQNNATTGP EITITLDGEG PVGQVNCMTV VNGTLFAGTQ SGQILAWQAS  180
SDGASPTANL TFIPLGVPSS MKHGGPVVCL CYGGNRLFSA SLDHTIKVWD HNLQCVATLK  240
GHSDGVMSLA FCGYYLVSSS LDGTIKIWAT TEKGHVETVY THEEGHGVLA LNGITLPPKT  300
CDAKEKEESD DQNNILLCSC NDNSVRLYAL PSFEEKGRFF TTQEVRTIQK GPGGQIFTGD  360
GSGRTTVW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ovp_B7e-134228398319F-box/WD repeat protein 7
2ovq_B7e-134228398319F-box/WD repeat protein 7
2ovr_B7e-134228398319F-box/WD repeat protein 7
5v4b_B7e-134228398319F-box/WD repeat-containing protein 7
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021828888.11e-113zinc finger CCCH domain-containing protein 48-like
TrEMBLA0A2P5A9K41e-137A0A2P5A9K4_PARAD; Guanine nucleotide-binding protein, beta subunit
STRINGEMJ216631e-111(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2176222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.11e-102zinc finger WD40 repeat protein 1