PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK02979.3
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family C3H
Protein Properties Length: 187aa    MW: 21072.8 Da    PI: 8.479
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK02979.3genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.84.3e-092546426
               ---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH  4 elCrffartGtCkyGdrCkFaHg 26
               + C+f+a+ G C +G+rC+F H+
  PK02979.3 25 KVCKFWAE-GRCVRGGRCRFVHS 46
               57******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.3282148IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-72346IPR000571Zinc finger, CCCH-type
SMARTSM003565.2E-52347IPR000571Zinc finger, CCCH-type
PfamPF006428.7E-62546IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-62546IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.101.2E-64965IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF1019084.84E-95091No hitNo description
Gene3DG3DSA:2.130.10.101.2E-6111180IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF1019084.84E-9119182No hitNo description
PROSITE patternPS006780125139IPR019775WD40 repeat, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MGITYLRRRA SESVSGNVKS GSMEKVCKFW AEGRCVRGGR CRFVHSWSRG DLYSYLANLH  60
GHTKVLLLHS LLFTVFDSWI GFVDWIHGLD WMMVPSFFLL ENVVLARYXA VTGIALPHSN  120
SGDKLYTTSY DGKLYIWDCH TAKTTAVINF GVPIGCLINE GPWLFIGLPN EIKVWNTQNN  180
ATTGPEX
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1463658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.11e-29zinc finger WD40 repeat protein 1