PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK03054.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

HD-ZIP

Protein Properties

Length: 1798aa MW: 202110 Da PI: 8.615

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK03054.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.6	8.9e-18	43	97	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk+q Le+ F+++++++ +++++LA+kl+L rqV vWFqNrRa+ k PK03054.1 43 RKKLRLTKQQSALLEDSFKEHNTLNPKQKQDLARKLNLRPRQVEVWFQNRRARTK 97 78889************************************************98 PP
2	HD-ZIP_I/II	118.3	4.2e-38	43	131	1	90
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl+k+q++lLE+sF+e+++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E dye +k+++++l+een+rL++eveeL+ + PK03054.1 43 RKKLRLTKQQSALLEDSFKEHNTLNPKQKQDLARKLNLRPRQVEVWFQNRRARTKLKQTEADYELMKKCCESLTEENKRLQREVEELK-A 131 69*************************************************************************************9.4 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.8E-17	24	97	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.97E-17	30	100	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.54	39	99	IPR001356	Homeobox domain
SMART	SM00389	1.1E-16	41	103	IPR001356	Homeobox domain
CDD	cd00086	1.45E-15	42	100	No hit	No description
Pfam	PF00046	3.4E-15	43	97	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	74	97	IPR017970	Homeobox, conserved site
CDD	cd14686	0.00203	90	131	No hit	No description
SMART	SM00340	5.1E-18	99	142	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	1.1E-7	99	132	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF14223	1.7E-11	422	552	No hit	No description
Pfam	PF13976	1.7E-12	821	883	IPR025724	GAG-pre-integrase domain
PROSITE profile	PS50994	18.935	894	1058	IPR001584	Integrase, catalytic core
Gene3D	G3DSA:3.30.420.10	3.7E-22	894	1051	IPR012337	Ribonuclease H-like domain
SuperFamily	SSF53098	2.58E-36	897	1066	IPR012337	Ribonuclease H-like domain
Pfam	PF00665	1.5E-15	898	1009	IPR001584	Integrase, catalytic core
SuperFamily	SSF56672	1.33E-36	1307	1530	No hit	No description
Pfam	PF07727	3.9E-93	1308	1551	IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase
SuperFamily	SSF56672	1.33E-36	1560	1741	No hit	No description
CDD	cd09272	1.44E-70	1635	1771	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0015074	Biological Process	DNA integration
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1798 aa Download sequence Send to blast
XGRGGSRGSG GDEFEVEVEL ERFSGSRVST NDELLDEDQA SPRKKLRLTK QQSALLEDSF 60 KEHNTLNPKQ KQDLARKLNL RPRQVEVWFQ NRRARTKLKQ TEADYELMKK CCESLTEENK 120 RLQREVEELK AVKLTAAPFL LQFPSTSTAT LTICPSCTER ICSSSGTSNG GGSSHHHDND 180 QYGSANSFLK INGAKPHHHN NSFSXLRNEV TTAGALEVAA XILQRILPLH CPLPGVLVVQ 240 NYGNQMIENS VRIFPFVIFI GICFCAICTM SRCSFFLVLN ILCIYINTLL CLKLIELRFI 300 PSLFYQTLLG IRASLSLSSS MAAPQEQTEG ASVTSTNRDS AAPIQLPNTY TQQPTTLNQP 360 FSLKLDRNNF TLWKTMVSTI VRGHRLHGYL LGTRMCPPEF IPVAGEAKYE GELETNPDYE 420 QWIINDQLLM GWLYSSMTEG IATEVMGSST AAGLWRSLES LYGAYSKSKM DETRTLIQTV 480 RKGSTPMTEY LRQKKNWSDI LALAGDPYPE AHLVANVLSG LDAEYLSIVV QIEARPTTTW 540 QELQDILLSF DSKIERLQTL SISSKPATSS TPQANLAAKN NPGNNSTGRG RGSQNSNHYT 600 NSGGRFSGNR GSPGRFRGRG RTNTSRPTCQ VCGKYGHSAA ICYNRFDESY MGSDPNNTNG 660 GNKTAQNNHN AFIASPEVLE SDAWFADSGA SNHITSDATA MNQKQPYGGK EKVVVGNGSK 720 LDISHVGSGV LDTNDGNFLL LKDMLHVPNI AKNLISVSKL TKDNNILIEF HSDMCLIKDK 780 ETRKVVLQGM LKDGLYRLED HQQSVTTNKH QYNRDNSFTC FSVESNVNQP RADESHVSRI 840 DVWHRRLGHP SPRILNQVLE SANVRKSKNE MQKFCDACQY GKSHALPYQL SSNRAKFPLD 900 LIHTDLWGAA PIASNANYRY YIHFLDDHSR FTWLYPLKFK SEALSAFIQF KNLVENKFDR 960 KIKCLRTDWG GEYQPFTSLV IDQGIEFQHS CPHTSTQNGR AERKHRHIVE MGLTLLAQAQ 1020 MPLKYWVDAF HTAVYLINRL PTPVLDHKSP YEVLFNEKPD YTFLKTFGTA CFPCIRPYQS 1080 HKFQYHSLKC VNLGYSTSHK GYKCLTPTGR IYISRNVVFN EMEFPFKHGF LNNYQNPKPV 1140 IIHSSSWSTL PVPTNDVDIS RSVHAHSEAI HDASPGFPQV STSVTPTSTN SVPAGENLIT 1200 TPDHITNFNE YFDQYTVEQD HELDTGTENI TLPTEPEAES PQPTLATALQ PTHQMITRAK 1260 AGVFKPKTYL SSSNATAVYT EPASVEEALK HPGWNNAMNT EVVALKKNKT WVLVPPTDNQ 1320 NLVGNKWIFR IKLRADGTVE RLKARLVAKG FHQRPGIDYG ETFSPVIKAS TVRIVLTIAA 1380 SRSWDIRQLD INNAFLNGTL EEEVFMAQPQ GFEEQGKESW VCKLNKSIYG LKQAPRAWFD 1440 KLKNTLITWK FENSKADTSL FFYKTEKCII LVLIYVDDII VTGNDGNKVN EFISRLNNLF 1500 ALKDLGQLHF FLGIEVFRDD TGLYLTQTRY IEDLLKKVNL THLKSCPTPV TAGKPLSIKD 1560 GEPMQNPSAY RSIIGSLQYL CHTRPDIAYS VNKLSQFLQA PTSAHWNALK RVLRYLQGTK 1620 RLGLHISCCN KLNIVGFSDA DWACCPDDRR SVAGYCVYLG ETLVSWSSKK QAVVSRSSTE 1680 SEYRALAHVS AEISWIESLL KELKFPLLLP SITWCDNISA SALASNPVFH ARTKHIEIDV 1740 HYVRDKVLQK QLEVRYIPSH DQVADLFTKG LANSRFSFLV SKLGVRSSPF RLRGDVEK

Sequence ? help Back to Top

Protein Sequence Length: 1798 aa Download sequence Send to blast

XGRGGSRGSG GDEFEVEVEL ERFSGSRVST NDELLDEDQA SPRKKLRLTK QQSALLEDSF  60
KEHNTLNPKQ KQDLARKLNL RPRQVEVWFQ NRRARTKLKQ TEADYELMKK CCESLTEENK  120
RLQREVEELK AVKLTAAPFL LQFPSTSTAT LTICPSCTER ICSSSGTSNG GGSSHHHDND  180
QYGSANSFLK INGAKPHHHN NSFSXLRNEV TTAGALEVAA XILQRILPLH CPLPGVLVVQ  240
NYGNQMIENS VRIFPFVIFI GICFCAICTM SRCSFFLVLN ILCIYINTLL CLKLIELRFI  300
PSLFYQTLLG IRASLSLSSS MAAPQEQTEG ASVTSTNRDS AAPIQLPNTY TQQPTTLNQP  360
FSLKLDRNNF TLWKTMVSTI VRGHRLHGYL LGTRMCPPEF IPVAGEAKYE GELETNPDYE  420
QWIINDQLLM GWLYSSMTEG IATEVMGSST AAGLWRSLES LYGAYSKSKM DETRTLIQTV  480
RKGSTPMTEY LRQKKNWSDI LALAGDPYPE AHLVANVLSG LDAEYLSIVV QIEARPTTTW  540
QELQDILLSF DSKIERLQTL SISSKPATSS TPQANLAAKN NPGNNSTGRG RGSQNSNHYT  600
NSGGRFSGNR GSPGRFRGRG RTNTSRPTCQ VCGKYGHSAA ICYNRFDESY MGSDPNNTNG  660
GNKTAQNNHN AFIASPEVLE SDAWFADSGA SNHITSDATA MNQKQPYGGK EKVVVGNGSK  720
LDISHVGSGV LDTNDGNFLL LKDMLHVPNI AKNLISVSKL TKDNNILIEF HSDMCLIKDK  780
ETRKVVLQGM LKDGLYRLED HQQSVTTNKH QYNRDNSFTC FSVESNVNQP RADESHVSRI  840
DVWHRRLGHP SPRILNQVLE SANVRKSKNE MQKFCDACQY GKSHALPYQL SSNRAKFPLD  900
LIHTDLWGAA PIASNANYRY YIHFLDDHSR FTWLYPLKFK SEALSAFIQF KNLVENKFDR  960
KIKCLRTDWG GEYQPFTSLV IDQGIEFQHS CPHTSTQNGR AERKHRHIVE MGLTLLAQAQ  1020
MPLKYWVDAF HTAVYLINRL PTPVLDHKSP YEVLFNEKPD YTFLKTFGTA CFPCIRPYQS  1080
HKFQYHSLKC VNLGYSTSHK GYKCLTPTGR IYISRNVVFN EMEFPFKHGF LNNYQNPKPV  1140
IIHSSSWSTL PVPTNDVDIS RSVHAHSEAI HDASPGFPQV STSVTPTSTN SVPAGENLIT  1200
TPDHITNFNE YFDQYTVEQD HELDTGTENI TLPTEPEAES PQPTLATALQ PTHQMITRAK  1260
AGVFKPKTYL SSSNATAVYT EPASVEEALK HPGWNNAMNT EVVALKKNKT WVLVPPTDNQ  1320
NLVGNKWIFR IKLRADGTVE RLKARLVAKG FHQRPGIDYG ETFSPVIKAS TVRIVLTIAA  1380
SRSWDIRQLD INNAFLNGTL EEEVFMAQPQ GFEEQGKESW VCKLNKSIYG LKQAPRAWFD  1440
KLKNTLITWK FENSKADTSL FFYKTEKCII LVLIYVDDII VTGNDGNKVN EFISRLNNLF  1500
ALKDLGQLHF FLGIEVFRDD TGLYLTQTRY IEDLLKKVNL THLKSCPTPV TAGKPLSIKD  1560
GEPMQNPSAY RSIIGSLQYL CHTRPDIAYS VNKLSQFLQA PTSAHWNALK RVLRYLQGTK  1620
RLGLHISCCN KLNIVGFSDA DWACCPDDRR SVAGYCVYLG ETLVSWSSKK QAVVSRSSTE  1680
SEYRALAHVS AEISWIESLL KELKFPLLLP SITWCDNISA SALASNPVFH ARTKHIEIDV  1740
HYVRDKVLQK QLEVRYIPSH DQVADLFTKG LANSRFSFLV SKLGVRSSPF RLRGDVEK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	91	99	RRARTKLKQ

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	3e-53	HD-ZIP family protein