PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK03107.4

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

MYB_related

Protein Properties

Length: 247aa MW: 27687.9 Da PI: 10.5843

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK03107.4	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.8	2.9e-09	63	98	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++ E e+++da +++G++ W+++a+ + +Rt +++ PK03107.4 63 QWSKGELERFYDAYRKYGKD-WRKVAAAVR-NRTVEMV 98 6***************99.*****.*9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.72E-10	59	106	IPR009057	Homeodomain-like
PROSITE profile	PS51293	9.086	59	112	IPR017884	SANT domain
SMART	SM00717	0.004	60	108	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-5	63	98	IPR009057	Homeodomain-like
Pfam	PF00249	1.1E-7	63	98	IPR001005	SANT/Myb domain
CDD	cd00167	5.79E-6	64	98	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MAPTKKSRVN KRYGSAISYS PEKEVGNSAK NKQRGSISFS PDGGNSNKSL QRKKKLSDKL 60 GSQWSKGELE RFYDAYRKYG KDWRKVAAAV RNRTVEMVEA LYSMNRAYLS LPEGTASVVG 120 LIAMMTDHYN VLEGSDSDQE SNDGSGISRK LPNRKRGRDN FNTSKDLFQS YSVASTDGCL 180 SLLKRKRSDG SQPRVVGKRT PRFPVSYSHK RDYRENQMSP NRKGKKAEND NDDAHVAALA 240 LTEASQR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024026911.1	1e-121	protein ALWAYS EARLY 2
Swissprot	Q6A333	8e-68	ALY2_ARATH; Protein ALWAYS EARLY 2
TrEMBL	A0A2P5AJ64	1e-142	A0A2P5AJ64_PARAD; Protein LIN-9/Protein ALWAYS EARLY
STRING	EMJ09328	1e-103	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1783	33	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	1e-65	DNA binding

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]