PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK03141.2

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

HB-other

Protein Properties

Length: 258aa MW: 29117.3 Da PI: 4.2073

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK03141.2	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	18.6	3.3e-06	211	244	12	45
HHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHH CS Homeobox 12 leeLeelFeknrypsaeereeLAkklgLterqVk 45 +e+L e+F++n ps++ +e L+k+lgL+ ++V+ PK03141.2 211 VERLREVFAENELPSRDVKENLSKELGLDSEKVT 244 789**************************99995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.98E-5	197	243	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.1E-6	198	243	IPR009057	Homeodomain-like
CDD	cd00086	1.84E-4	200	243	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
XNAHLGTYFS MNNSWEVSHS ETGFVLKCSS LFTSSQIVEL FSVKDVFEEE AALPEDANAS 60 LHPDVEWPSD DSGDENYDPE RKENSSSISG EDTDDHVWEG EFSTDGSVGS DESDGGIVCG 120 RRQRRDVDYR KLYDEMFGKD APPCEQISED EDWGPSKRKR RAKESDAAST LMTLFESEKV 180 NSDVDVEEVE GQLPPEAQIR RSFFRIPRIA VERLREVFAE NELPSRDVKE NLSKELGLDS 240 EKVTLSNTHE YSTAHKSI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015893916.1	5e-94	pathogenesis-related homeodomain protein isoform X1
Refseq	XP_015893988.1	4e-94	pathogenesis-related homeodomain protein isoform X2
TrEMBL	A0A2P5C6N9	1e-110	A0A2P5C6N9_TREOI; Octamer-binding transcription factor
STRING	XP_010087997.1	9e-91	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5275	33	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29940.1	2e-43	pathogenesis related homeodomain protein A