PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK03412.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family ZF-HD
Protein Properties Length: 164aa    MW: 17761.4 Da    PI: 9.2373
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK03412.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer40.94.9e-134293358
  ZF-HD_dimer 33 geegtaaalkCaACgCHRnFHRreve 58
                 g+eg+ ++lkCaAC CHRnFHR+e++
    PK03412.1  4 GAEGSLDGLKCAACSCHRNFHRKETD 29
                 77899******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047705.4E-10228IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-7230IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466894.93E-14100164IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-25107164IPR009057Homeodomain-like
TIGRFAMsTIGR015651.4E-19113164IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
XAAGAEGSLD GLKCAACSCH RNFHRKETDS GGITADPYGG PLVPHHYPHP QLSPYYRTPT  60
GYLHVAPHHR PLALPSTSGG GAGSHSREDQ EDVSNPSGGG GSGFGFGSGS SSKKRFRTKF  120
SQEQKDRMLA LAERLGWRIQ KQDEAVVQQF CNETGVRRQV LKVW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-231121641668ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
UniProtPutative transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021802442.13e-74zinc-finger homeodomain protein 1-like
SwissprotA2Z2592e-53ZHD1_ORYSI; Zinc-finger homeodomain protein 1
SwissprotQ6YXH53e-53ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBLA0A2P5ADF14e-84A0A2P5ADF1_PARAD; Octamer-binding transcription factor
STRINGXP_010266504.12e-73(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.17e-44homeobox protein 22
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]