PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK03426.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family C3H
Protein Properties Length: 726aa    MW: 80916.7 Da    PI: 5.6563
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK03426.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.64.5e-08131152527
                --SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                 C ff++ G+C+ Gd+C F Hgp
  PK03426.1 131 SCIFFQK-GYCNKGDKCVFLHGP 152
                6******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.8033261IPR000571Zinc finger, CCCH-type
PfamPF156632.4E-113387No hitNo description
SMARTSM003560.00183360IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.166389IPR000571Zinc finger, CCCH-type
SMARTSM003560.26588IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-5126152IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.098126153IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-5127152IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5128151IPR000571Zinc finger, CCCH-type
PfamPF006427.1E-6130152IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 726 aa     Download sequence    Send to blast
MVAGTQQQSQ QLLQTQPPQQ QQLPISAEEE ALKRNTDCVY FLASPLTCKK GSECEYRHSE  60
YARINPRDCW YWLNGNCLNP KCSFRHPPLD GLLGTQAAPS VPSVGSGPPS SQAAAASAAA  120
GTQNSSKQPV SCIFFQKGYC NKGDKCVFLH GPNSTHSMKV PQPSAPTFVS EPSIVKKAFG  180
GLQKCTQEQR IPQANSSKLV VPPTKANNTL KVENAPSRNG VSFERVAPSV KAFDDKSLRF  240
KTVNTPVING NLTSRSSRSH IVNVSDDNSF QNGKDADEYL RESSPGFDVL VDDELRDPEY  300
FHGEDQFGQG HDGRNVNLVD EYDMEKSADY GAAAEIDRER LRDSRGYDSY DHMQGQYAWD  360
QHRVSSERLL VGPAQFDRRG YRKSHSPDNI NESDLRHRLS KHRRVDGLRS VISHDHAVNN  420
HVDDRNYRGS SRRDSHQKSQ HEGALGGRLR GRIKLPGGSS TNSGDLPFDR EFDRSRSRGR  480
LSPSRPQIST NHGRFRDRLK GIAQDDYSNQ DRNFRGLRPR RDDMDDESID FSGPKRLSEL  540
KVGRVTETKE QSHLGKRKNT RMEASQHSED LSFEGPKPLS EILKRKRGGA DSAAFRSGNS  600
VTEEDNQREN RKSNQGDFKG TRSTVSKQGN SVLSNEGESK STTAEVVGIE DKGSNVLSSE  660
TPNANDEVED GMIYDETIDQ EFEAEDHGEY DYEQGEEGEF DGENVEGEEE YYEEGEGEGE  720
GEGEGX
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010103791.10.0zinc finger CCCH domain-containing protein 17
RefseqXP_024026128.10.0zinc finger CCCH domain-containing protein 17
TrEMBLA0A2P5F6Q00.0A0A2P5F6Q0_TREOI; Zinc finger, CCCH-type
STRINGXP_010103791.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF92273137