PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK03426.2
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family C3H
Protein Properties Length: 293aa    MW: 31981.2 Da    PI: 7.9489
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK03426.2genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.11.5e-08113134527
                --SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                 C ff++ G+C+ Gd+C F Hgp
  PK03426.2 113 SCIFFQK-GYCNKGDKCVFLHGP 134
                6******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.164571IPR000571Zinc finger, CCCH-type
SMARTSM003560.24770IPR000571Zinc finger, CCCH-type
PfamPF146081.4E-55069No hitNo description
SMARTSM003563.5E-5108134IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.098108135IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-6109134IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-6110133IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-6112134IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
XSCSILQGFY LNSYLALYIF VVNSVPFLSL HQGSECEYRH SEYARINPRD CWYWLNGNCL  60
NPKCSFRHPP LDGLLGTQAA PSVPSVGSGP PSSQAAAASA AAGTQNSSKQ PVSCIFFQKG  120
YCNKGDKCVF LHGPNSTHSM KVPQPSAPTF VSEPSIVKKA FGGLQKCTQE QRIPQANSSK  180
LVVPPTKANN TLKVENAPSR NGVSFERVAP SVKAFDDKSL RFKTVNTPVI NGNLTSRSSR  240
SHIVNVSDDN SFQNGKDADE YLRESSPGFD VLVDDELRDP EYFHGEDQFG QGX
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010103791.11e-125zinc finger CCCH domain-containing protein 17
RefseqXP_024026128.11e-125zinc finger CCCH domain-containing protein 17
TrEMBLA0A2P5DY411e-145A0A2P5DY41_PARAD; Zinc finger, CCCH-type
STRINGXP_010103791.11e-125(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF92273137