PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK03562.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

HSF

Protein Properties

Length: 402aa MW: 46030.1 Da PI: 4.3548

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK03562.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	111.3	6.6e-35	24	116	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Flkk ye+++d++++++isw+++++sfv++d+++f+ +LpkyFkhsnf+SF+RQLn+YgF+kv+ ++ w F+++ F +g+k+ll++i PK03562.1 24 FLKKCYEMVNDDSTDSIISWNDTNDSFVIWDMTQFSVGLLPKYFKHSNFSSFMRQLNIYGFRKVHPDR---------WMFANNGFIRGQKHLLKNIC 111 9**************************************************************999.........****************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 r+k++ PK03562.1 112 RRKHS 116 *9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46785	3.67E-33	19	113	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	4.2E-50	20	113	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	1.0E-35	20	113	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	4.0E-18	24	47	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	5.9E-30	24	113	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.0E-18	62	74	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	63	87	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.0E-18	75	87	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence Send to blast
MVKSTQIGDG GDGGSGSASS IAPFLKKCYE MVNDDSTDSI ISWNDTNDSF VIWDMTQFSV 60 GLLPKYFKHS NFSSFMRQLN IYGFRKVHPD RWMFANNGFI RGQKHLLKNI CRRKHSQDPD 120 QRKAFQQKES HPEETYEKVE DGLWREVENL KIDKGALAQE LVNLQQHQKT ADNKMLVLGD 180 RLQGMEKNQQ QMLSFLVMAV QNPGLFVQLL QPKENNWRMS EAGSRLEEVT EDDNPEAASD 240 GGMIVRYLPS PNETSNPVFT STEKPTETSS YPDGMQDFFL NSDFMKILMD EKLNPLETHS 300 PFILPELADD NSWEQLLLAS PFREDNKDSK DEEETNNTET PQGECRNFDY LEHMETSHNF 360 EMEPAVYEGQ FEMSHNNMES LESLNEEMGV LLSSEPENNG VA

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence Send to blast

MVKSTQIGDG GDGGSGSASS IAPFLKKCYE MVNDDSTDSI ISWNDTNDSF VIWDMTQFSV  60
GLLPKYFKHS NFSSFMRQLN IYGFRKVHPD RWMFANNGFI RGQKHLLKNI CRRKHSQDPD  120
QRKAFQQKES HPEETYEKVE DGLWREVENL KIDKGALAQE LVNLQQHQKT ADNKMLVLGD  180
RLQGMEKNQQ QMLSFLVMAV QNPGLFVQLL QPKENNWRMS EAGSRLEEVT EDDNPEAASD  240
GGMIVRYLPS PNETSNPVFT STEKPTETSS YPDGMQDFFL NSDFMKILMD EKLNPLETHS  300
PFILPELADD NSWEQLLLAS PFREDNKDSK DEEETNNTET PQGECRNFDY LEHMETSHNF  360
EMEPAVYEGQ FEMSHNNMES LESLNEEMGV LLSSEPENNG VA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	1e-22	14	113	19	129	Heat shock factor protein 1
5d5v_B	1e-22	14	113	19	129	Heat shock factor protein 1
5d5v_D	1e-22	14	113	19	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010093311.1	1e-164	heat stress transcription factor A-8
Swissprot	Q9S7U5	4e-99	HSFA8_ARATH; Heat stress transcription factor A-8
TrEMBL	A0A2P5D489	0.0	A0A2P5D489_TREOI; Heat shock transcription factor
STRING	XP_010093311.1	1e-164	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10419	29	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67970.1	1e-100	heat shock transcription factor A8